Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- endoplasmic reticulum 2
- peroxisome 1
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g050360.1.1 | Tomato | cytosol | 25.35 | 72.0 |
| Solyc04g050370.1.1 | Tomato | cytosol | 33.8 | 70.59 |
| Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 56.34 | 67.23 |
| Solyc04g050430.1.1 | Tomato | cytosol | 39.44 | 61.54 |
| Solyc04g050410.1.1 | Tomato | cytosol | 19.72 | 59.57 |
| Solyc04g050390.1.1 | Tomato | plastid | 58.45 | 57.64 |
| Solyc04g050340.1.1 | Tomato | cytosol | 27.46 | 47.56 |
| Solyc06g075180.1.1 | Tomato | nucleus | 46.48 | 39.76 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 45.77 | 39.16 |
| Solyc11g065670.1.1 | Tomato | cytosol | 45.77 | 39.16 |
| VIT_08s0040g01870.t01 | Wine grape | cytosol | 43.66 | 37.35 |
| VIT_06s0004g02840.t01 | Wine grape | cytosol | 42.96 | 36.75 |
| Solyc04g050420.1.1 | Tomato | cytosol | 32.39 | 35.94 |
| AT5G60670.1 | Thale cress | cytosol | 40.85 | 34.94 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 40.14 | 34.34 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 40.14 | 34.34 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 40.14 | 34.34 |
| Os02t0699600-01 | Rice | nucleus | 40.14 | 34.34 |
| Zm00001d002450_P001 | Maize | cytosol | 40.14 | 34.34 |
| EES10673 | Sorghum | cytosol | 40.14 | 34.34 |
| EES07409 | Sorghum | cytosol | 40.14 | 34.34 |
| Zm00001d017719_P001 | Maize | plastid | 40.14 | 34.34 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 39.44 | 33.94 |
| Zm00001d051543_P001 | Maize | plastid | 39.44 | 33.73 |
| EES11363 | Sorghum | cytosol | 39.44 | 33.73 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 38.73 | 33.33 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 38.73 | 33.13 |
| AT3G53430.1 | Thale cress | cytosol | 38.73 | 33.13 |
| Zm00001d031348_P001 | Maize | cytosol | 38.73 | 33.13 |
| Zm00001d003896_P001 | Maize | plastid | 38.03 | 32.53 |
| AT2G37190.1 | Thale cress | cytosol | 38.03 | 32.53 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 39.44 | 29.32 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 39.44 | 28.72 |
| Zm00001d043268_P001 | Maize | cytosol | 37.32 | 26.11 |
| Zm00001d010017_P001 | Maize | cytosol | 38.73 | 24.55 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 19.72 | 22.05 |
| GSMUA_Achr10P... | Banana | cytosol | 16.2 | 18.55 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.40.640.10 | GO:GO:0000027 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0003824 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0019843 | GO:GO:0022625 | InterPro:IPR015421 | InterPro:IPR036769 | UniProt:K4BS10 | PFAM:PF00298 |
| PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:PyrdxlP-dep_Trfase_major | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11_C | InterPro:Ribosomal_L11_C_sf |
| SMART:SM00649 | SUPFAM:SSF46906 | EnsemblPlantsGene:Solyc04g050380.1 | EnsemblPlants:Solyc04g050380.1.1 | UniParc:UPI0002766BEB | : |
Description
No Description!
Coordinates
chr4:-:46891844..46892325
Molecular Weight (calculated)
16085.0 Da
IEP (calculated)
8.958
GRAVY (calculated)
-0.053
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVMEMSHCR KEFLSIIQKA ESILRTLLNM FDEYAVLFLQ VCAFLSKVSV VPSSSALVIK ALKEPKRDRK KTKNIKHNGN ISPDVVIEIA KVMQPRSMVK
101: DFSGTIKEIL GTCVSIGCMV DRKDPKDLQQ EIIYGDMEIP QH
101: DFSGTIKEIL GTCVSIGCMV DRKDPKDLQQ EIIYGDMEIP QH
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE
Arabidopsis Description
RPL12C60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.