Factsheet for Solyc04g050360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050410.1.1	Tomato	cytosol	50.0	53.19
Solyc04g050370.1.1	Tomato	cytosol	58.0	42.65
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	72.0	30.25
Solyc06g075180.1.1	Tomato	nucleus	90.0	27.11
Solyc04g050390.1.1	Tomato	plastid	74.0	25.69
Solyc04g050380.1.1	Tomato	plastid	72.0	25.35
VIT_08s0040g01870.t01	Wine grape	cytosol	84.0	25.3
Solyc11g065670.1.1	Tomato	cytosol	84.0	25.3
Solyc11g069440.1.1	Tomato	nucleus, plastid	84.0	25.3
VIT_06s0004g02840.t01	Wine grape	cytosol	82.0	24.7
Os02t0699600-01	Rice	nucleus	76.0	22.89
Zm00001d017719_P001	Maize	plastid	76.0	22.89
EES11363	Sorghum	cytosol	76.0	22.89
EES10673	Sorghum	cytosol	76.0	22.89
EES07409	Sorghum	cytosol	76.0	22.89
TraesCS2A01G443200.1	Wheat	cytosol	74.0	22.29
TraesCS2B01G464300.1	Wheat	golgi, plastid	74.0	22.29
TraesCS2D01G442300.1	Wheat	cytosol	74.0	22.29
AT2G37190.1	Thale cress	cytosol	74.0	22.29
Zm00001d002450_P001	Maize	cytosol	74.0	22.29
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	74.0	22.29
Zm00001d003896_P001	Maize	plastid	74.0	22.29
Zm00001d051543_P001	Maize	plastid	74.0	22.29
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	72.0	21.82
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	72.0	21.82
Zm00001d031348_P001	Maize	cytosol	72.0	21.69
Solyc04g050420.1.1	Tomato	cytosol	54.0	21.09
AT3G53430.1	Thale cress	cytosol	70.0	21.08
AT5G60670.1	Thale cress	cytosol	70.0	21.08
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	72.0	18.85
HORVU6Hr1G067870.1	Barley	cytosol, plastid	72.0	18.46
Zm00001d043268_P001	Maize	cytosol	68.0	16.75
Zm00001d010017_P001	Maize	cytosol	68.0	15.18
Solyc04g050340.1.1	Tomato	cytosol	22.0	13.41
TraesCS6B01G295500.1	Wheat	cytosol	34.0	13.39
Solyc04g050430.1.1	Tomato	cytosol	20.0	10.99
GSMUA_Achr10P...	Banana	cytosol	8.0	3.23

Protein Annotations

Gene3D:1.10.10.250	MapMan:35.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036769	UniProt:K4BS08
PFAM:PF00298	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11_C
InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	SUPFAM:SSF46906	EnsemblPlantsGene:Solyc04g050360.1	EnsemblPlants:Solyc04g050360.1.1	UniParc:UPI0002766BE9

Description

No Description!

Coordinates

chr4:-:46858734..46858886

Molecular Weight (calculated)

5410.3 Da

IEP (calculated)

3.829

GRAVY (calculated)

-0.398

Length

50 amino acids

Sequence
(BLAST)

1: MQPRSMAKDF SGTVKEILGT CVSVGCTVDG KDTMDFQQDI TDGDVEIPQD

Best Arabidopsis Sequence Match ( AT2G01220.2 )
(BLAST)

001: MGDAAIRTVV EAIHSSPTQA VVYLCGGASL ALGWLMSVPG ASNTLLESVV PYSRVSMVQL LGRVPSQHCS QALAKEMALL AYNRALKLSK PGYPVLGVGF
101: TGSLVTSRPK RGDHRFFLSM RASDRILESS VTLTKNLRSR EEEDKVSSCA LIQAMAKACQ VSGTLDSGLT ESEVPYESET HFTEEQELEQ LINGHLCCKI
201: YPFSGEAHGS DEDRKIILPG SFNPLHEGHL KLLEVAMSVC GGGYPCFEIS AINADKPPLT IAQIKDRVKQ FEVVGKTIIV SNQPYFYKKA ELFPGSSFVI
301: GADTAARLVN PKYYEGSIKR MLEILGDCKR TGCTFLVGGR NVDGVFKVLE DVDIPEEIID MFISIPADIF RMDISSTEIR KKQGGGTN

Arabidopsis Description

Nucleotidylyl transferase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L845]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.