Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039782.1-P Field mustard cytosol 99.4 99.4
Bra039787.1-P Field mustard cytosol 99.4 99.4
CDX76214 Canola cytosol 99.4 99.4
CDY30876 Canola cytosol 99.4 99.4
AT2G37190.1 Thale cress cytosol 98.19 98.19
AT5G60670.1 Thale cress cytosol 93.98 93.98
TraesCS6B01G295500.1 Wheat cytosol 70.48 92.13
TraesCS6A01G268300.1 Wheat cytosol, nucleus 88.55 89.09
Zm00001d051543_P001 Maize plastid 88.55 88.55
Zm00001d017719_P001 Maize plastid 88.55 88.55
VIT_13s0019g04300.t01 Wine grape cytosol 88.55 88.55
VIT_08s0040g01870.t01 Wine grape cytosol 88.55 88.55
VIT_06s0004g02840.t01 Wine grape cytosol 88.55 88.55
Os04t0598200-00 Rice cytosol, extracellular, nucleus, plastid 88.55 88.55
Os02t0699600-01 Rice nucleus 88.55 88.55
TraesCS6D01G246600.1 Wheat cytosol, golgi, nucleus, unclear 87.95 88.48
EES10673 Sorghum cytosol 87.95 87.95
TraesCS2B01G464300.1 Wheat golgi, plastid 87.95 87.95
TraesCS2A01G443200.1 Wheat cytosol 87.95 87.95
TraesCS2D01G442300.1 Wheat cytosol 87.95 87.95
Zm00001d002450_P001 Maize cytosol 87.95 87.95
Zm00001d003896_P001 Maize plastid 87.95 87.95
EES07409 Sorghum cytosol 87.95 87.95
KRH29917 Soybean endoplasmic reticulum, nucleus 87.95 87.95
KRH25012 Soybean cytosol, endoplasmic reticulum, nucleus 87.95 87.95
GSMUA_Achr4P09610_001 Banana cytosol 72.29 87.59
KRH19864 Soybean endoplasmic reticulum 87.35 87.35
Solyc11g069440.1.1 Tomato nucleus, plastid 87.35 87.35
EES11363 Sorghum cytosol 87.35 87.35
GSMUA_Achr10P... Banana cytosol 87.35 87.35
Solyc11g065670.1.1 Tomato cytosol 87.35 87.35
PGSC0003DMT400020871 Potato cytosol 86.75 86.75
PGSC0003DMT400083480 Potato cytosol 86.75 86.75
GSMUA_Achr8P23840_001 Banana cytosol 86.75 86.75
KRH32476 Soybean endoplasmic reticulum 86.75 86.75
Solyc06g075180.1.1 Tomato nucleus 86.14 86.14
PGSC0003DMT400008687 Potato cytosol 85.54 85.54
Zm00001d031348_P001 Maize cytosol 82.53 82.53
HORVU2Hr1G102610.1 Barley cytosol, mitochondrion 87.35 75.92
HORVU6Hr1G067870.1 Barley cytosol, plastid 88.55 75.38
Solyc04g050370.1.1 Tomato cytosol 30.12 73.53
Solyc04g050360.1.1 Tomato cytosol 21.08 70.0
GSMUA_Achr6P03690_001 Banana cytosol 70.48 67.63
GSMUA_Achr7P19710_001 Banana cytosol 70.48 61.9
Solyc04g050410.1.1 Tomato cytosol 16.87 59.57
Zm00001d010017_P001 Maize cytosol 69.28 51.34
Zm00001d043268_P001 Maize cytosol 56.63 46.31
Solyc04g050400.1.1 Tomato endoplasmic reticulum, vacuole 30.12 42.02
Solyc04g050420.1.1 Tomato cytosol 30.72 39.84
Solyc04g050380.1.1 Tomato plastid 33.13 38.73
Solyc04g050390.1.1 Tomato plastid 31.93 36.81
Solyc04g050340.1.1 Tomato cytosol 16.27 32.93
GSMUA_Achr10P... Banana cytosol 24.1 32.26
Solyc04g050430.1.1 Tomato cytosol 15.66 28.57
Protein Annotations
Gene3D:1.10.10.250MapMan:17.1.2.1.12Gene3D:3.30.1550.10EntrezGene:824511UniProt:A0A178VEB7ProteinID:AEE79085.1
EMBL:AK226484ArrayExpress:AT3G53430EnsemblPlantsGene:AT3G53430RefSeq:AT3G53430TAIR:AT3G53430RefSeq:AT3G53430-TAIR-G
EnsemblPlants:AT3G53430.1TAIR:AT3G53430.1EMBL:AY140102EMBL:BT002590ProteinID:CAB67650.1GO:GO:0000027
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016020GO:GO:0016043GO:GO:0019538GO:GO:0019843GO:GO:0022625GO:GO:0030529
InterPro:IPR036769InterPro:IPR036796HAMAP:MF_00736RefSeq:NP_190911.1ProteinID:OAP04579.1PFAM:PF00298
PFAM:PF03946PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281ScanProsite:PS00359PANTHER:PTHR11661PANTHER:PTHR11661:SF2UniProt:Q0WW72UniProt:Q9LFH5
InterPro:Ribosomal_L11/L12InterPro:Ribosomal_L11/L12_N_sfInterPro:Ribosomal_L11_CInterPro:Ribosomal_L11_CSInterPro:Ribosomal_L11_C_sfInterPro:Ribosomal_L11_N
SMART:SM00649SUPFAM:SSF46906SUPFAM:SSF54747UniParc:UPI00000ABFFBSEG:seg:
Description
RPL12B60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]
Coordinates
chr3:-:19809313..19810520
Molecular Weight (calculated)
17970.9 Da
IEP (calculated)
9.575
GRAVY (calculated)
-0.333
Length
166 amino acids
Sequence
(BLAST)
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.