Factsheet for Zm00001d031348_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051543_P001	Maize	plastid	92.77	92.77
Zm00001d002450_P001	Maize	cytosol	92.77	92.77
EES11363	Sorghum	cytosol	90.96	90.96
Zm00001d003896_P001	Maize	plastid	90.96	90.96
TraesCS6B01G295500.1	Wheat	cytosol	69.28	90.55
Zm00001d017719_P001	Maize	plastid	90.36	90.36
TraesCS2D01G442300.1	Wheat	cytosol	89.76	89.76
TraesCS2B01G464300.1	Wheat	golgi, plastid	89.76	89.76
TraesCS2A01G443200.1	Wheat	cytosol	89.76	89.76
Os02t0699600-01	Rice	nucleus	89.16	89.16
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.16	89.16
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	88.55	89.09
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	87.95	88.48
Solyc11g069440.1.1	Tomato	nucleus, plastid	86.75	86.75
PGSC0003DMT400008687	Potato	cytosol	86.75	86.75
PGSC0003DMT400020871	Potato	cytosol	86.75	86.75
PGSC0003DMT400083480	Potato	cytosol	86.75	86.75
Solyc06g075180.1.1	Tomato	nucleus	86.75	86.75
Solyc11g065670.1.1	Tomato	cytosol	86.75	86.75
VIT_06s0004g02840.t01	Wine grape	cytosol	86.14	86.14
VIT_08s0040g01870.t01	Wine grape	cytosol	86.14	86.14
VIT_13s0019g04300.t01	Wine grape	cytosol	84.94	84.94
KRH29917	Soybean	endoplasmic reticulum, nucleus	83.73	83.73
KRH19864	Soybean	endoplasmic reticulum	83.73	83.73
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	83.73	83.73
GSMUA_Achr10P...	Banana	cytosol	83.73	83.73
CDX76214	Canola	cytosol	83.13	83.13
Bra017204.1-P	Field mustard	cytosol	83.13	83.13
GSMUA_Achr8P23840_001	Banana	cytosol	83.13	83.13
Bra039787.1-P	Field mustard	cytosol	83.13	83.13
Bra039782.1-P	Field mustard	cytosol	83.13	83.13
CDY70392	Canola	cytosol	83.13	83.13
AT2G37190.1	Thale cress	cytosol	83.13	83.13
Bra023104.1-P	Field mustard	cytosol	83.13	83.13
KRH32476	Soybean	endoplasmic reticulum	83.13	83.13
CDY30876	Canola	cytosol	83.13	83.13
CDY46760	Canola	cytosol	83.13	83.13
CDY13296	Canola	cytosol	82.53	82.53
AT5G60670.1	Thale cress	cytosol	82.53	82.53
CDY52760	Canola	cytosol	82.53	82.53
CDY56698	Canola	cytosol	82.53	82.53
AT3G53430.1	Thale cress	cytosol	82.53	82.53
GSMUA_Achr4P09610_001	Banana	cytosol	68.07	82.48
CDX78178	Canola	cytosol, extracellular	81.93	81.93
Bra003134.1-P	Field mustard	cytosol	81.93	81.93
CDY31522	Canola	cytosol	81.33	81.33
Bra006998.1-P	Field mustard	cytosol	81.33	81.33
Bra002460.1-P	Field mustard	cytosol	81.33	81.33
CDY53628	Canola	cytosol	80.72	80.72
CDY27019	Canola	cytosol	80.12	79.64
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	89.76	78.01
HORVU6Hr1G067870.1	Barley	cytosol, plastid	88.55	75.38
Solyc04g050370.1.1	Tomato	cytosol	30.72	75.0
Solyc04g050360.1.1	Tomato	cytosol	21.69	72.0
GSMUA_Achr6P03690_001	Banana	cytosol	66.27	63.58
GSMUA_Achr7P19710_001	Banana	cytosol	67.47	59.26
Solyc04g050410.1.1	Tomato	cytosol	16.27	57.45
CDX91342	Canola	cytosol	18.07	56.6
Zm00001d010017_P001	Maize	cytosol	75.3	55.8
Zm00001d043268_P001	Maize	cytosol	62.65	51.23
CDX74982	Canola	nucleus	22.29	44.58
Bra005214.1-P	Field mustard	nucleus	22.29	44.58
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	31.93	44.54
Solyc04g050420.1.1	Tomato	cytosol	31.93	41.41
Solyc04g050380.1.1	Tomato	plastid	33.13	38.73
Solyc04g050390.1.1	Tomato	plastid	33.13	38.19
Solyc04g050340.1.1	Tomato	cytosol	16.87	34.15
GSMUA_Achr10P...	Banana	cytosol	22.89	30.65
Solyc04g050430.1.1	Tomato	cytosol	16.27	29.67

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:103641586	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	UniProt:A0A1D6KIE7	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	ProteinID:ONM02761.1
PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI00022084E3	EnsemblPlantsGene:Zm00001d031348	EnsemblPlants:Zm00001d031348_P001	EnsemblPlants:Zm00001d031348_T001

Description

60S ribosomal protein L12-3

Coordinates

chr1:+:187040656..187041156

Molecular Weight (calculated)

17931.8 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.323

Length

166 amino acids

Sequence
(BLAST)

001: MSPKLDPSQV VEVFVRVTGG EVSAASSLAP KIGPLCLSSR KIGEDIAKET AKDWKGLRVT VKLTMQNRQA KVSVVPSAAA LVIKAPKEPE RDRKKVKNIK
101: HNGSISLDDV IEITKTMRHR SMAKELAGTV KEILGTYVSV GCTVDGKDPK DLQQEIDDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.