Factsheet for VIT_06s0004g02840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01870.t01	Wine grape	cytosol	99.4	99.4
VIT_13s0019g04300.t01	Wine grape	cytosol	96.39	96.39
TraesCS6B01G295500.1	Wheat	cytosol	71.08	92.91
TraesCS2A01G443200.1	Wheat	cytosol	91.57	91.57
TraesCS2B01G464300.1	Wheat	golgi, plastid	91.57	91.57
TraesCS2D01G442300.1	Wheat	cytosol	91.57	91.57
Zm00001d017719_P001	Maize	plastid	91.57	91.57
Zm00001d002450_P001	Maize	cytosol	91.57	91.57
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	90.96	91.52
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	90.96	90.96
Os02t0699600-01	Rice	nucleus	90.96	90.96
Zm00001d051543_P001	Maize	plastid	90.96	90.96
EES10673	Sorghum	cytosol	90.96	90.96
EES07409	Sorghum	cytosol	90.96	90.96
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	90.36	90.91
EES11363	Sorghum	cytosol	90.36	90.36
Zm00001d003896_P001	Maize	plastid	89.76	89.76
AT5G60670.1	Thale cress	cytosol	89.76	89.76
AT2G37190.1	Thale cress	cytosol	89.16	89.16
AT3G53430.1	Thale cress	cytosol	88.55	88.55
Zm00001d031348_P001	Maize	cytosol	86.14	86.14
Solyc04g050370.1.1	Tomato	cytosol	34.34	83.82
Solyc04g050360.1.1	Tomato	cytosol	24.7	82.0
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	90.96	79.06
HORVU6Hr1G067870.1	Barley	cytosol, plastid	90.96	77.44
Zm00001d010017_P001	Maize	cytosol	71.69	53.12
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	34.94	48.74
Zm00001d043268_P001	Maize	cytosol	58.43	47.78
Solyc04g050420.1.1	Tomato	cytosol	34.94	45.31
Solyc04g050390.1.1	Tomato	plastid	37.95	43.75
Solyc04g050380.1.1	Tomato	plastid	36.75	42.96
Solyc04g050340.1.1	Tomato	cytosol	18.07	36.59
GSMUA_Achr10P...	Banana	cytosol	25.3	33.87
Solyc04g050430.1.1	Tomato	cytosol	18.07	32.97

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:100853149	wikigene:100853149	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	ProteinID:CCB43671
ProteinID:CCB43671.1	UniProt:F6GU07	EMBL:FN594951	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	EntrezGene:LOC100853149	wikigene:LOC100853149
HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2
InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N
SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	TIGR:TC55519	UniParc:UPI000210AC32	ArrayExpress:VIT_06s0004g02840
EnsemblPlantsGene:VIT_06s0004g02840	EnsemblPlants:VIT_06s0004g02840.t01	RefSeq:XP_003632111	RefSeq:XP_003632111.1	RefSeq:XP_010651161.1	RefSeq:XP_019076238.1

Description

No Description!

Coordinates

chr6:+:3568706..3569365

Molecular Weight (calculated)

17778.7 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.284

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQV VDVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIAKIMRPR SMAKDLSGSV KEILGTCVSV GCTVDGKDPK DLQQEIADGD VEIPLD

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.