Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049815_P002 | Maize | cytosol | 99.42 | 99.42 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 92.4 | 92.4 |
| Os08t0530200-01 | Rice | nucleus | 89.47 | 89.47 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 85.96 | 85.47 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 85.96 | 85.47 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 85.38 | 84.88 |
| KRH08728 | Soybean | cytosol, nucleus | 81.87 | 83.33 |
| KRH31467 | Soybean | nucleus | 87.13 | 82.32 |
| KRG97436 | Soybean | nucleus | 87.13 | 82.32 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 64.91 | 82.22 |
| PGSC0003DMT400039421 | Potato | nucleus | 82.46 | 81.5 |
| KRH58763 | Soybean | nucleus | 85.96 | 81.22 |
| AT1G67430.1 | Thale cress | nucleus | 82.46 | 80.57 |
| AT1G27400.1 | Thale cress | cytosol | 82.46 | 80.11 |
| Bra033999.1-P | Field mustard | nucleus | 81.87 | 80.0 |
| Solyc06g071870.2.1 | Tomato | nucleus | 81.87 | 80.0 |
| Solyc06g071880.2.1 | Tomato | cytosol | 63.74 | 79.56 |
| Bra032828.1-P | Field mustard | cytosol | 81.87 | 79.55 |
| PGSC0003DMT400069384 | Potato | nucleus | 81.29 | 79.43 |
| Bra004225.1-P | Field mustard | nucleus | 79.53 | 77.71 |
| KRH42661 | Soybean | nucleus | 85.38 | 77.25 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 84.8 | 76.72 |
| CDY27616 | Canola | cytosol | 81.29 | 75.14 |
| OQU80827 | Sorghum | cytosol | 80.7 | 73.8 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 81.87 | 73.3 |
| CDX90084 | Canola | endoplasmic reticulum | 82.46 | 73.06 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 85.38 | 73.0 |
| CDY03920 | Canola | extracellular, mitochondrion | 81.87 | 71.79 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 81.87 | 71.43 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 86.55 | 70.81 |
| CDY56187 | Canola | mitochondrion | 81.87 | 70.35 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 83.63 | 70.1 |
| CDY12646 | Canola | cytosol, plastid | 81.87 | 69.65 |
| Zm00001d010009_P003 | Maize | cytosol | 86.55 | 69.48 |
| CDY07422 | Canola | mitochondrion | 81.87 | 69.31 |
| Bra010943.1-P | Field mustard | cytosol | 81.87 | 68.97 |
| CDY01809 | Canola | extracellular | 81.87 | 68.97 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 85.38 | 66.97 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 83.63 | 66.51 |
| CDY15709 | Canola | extracellular | 82.46 | 66.51 |
| CDY51350 | Canola | cytosol, plastid | 81.87 | 65.73 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 46.78 | 65.04 |
| Zm00001d003788_P001 | Maize | cytosol | 32.75 | 63.64 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 85.96 | 63.09 |
| Zm00001d033767_P002 | Maize | nucleus | 73.1 | 62.81 |
| Zm00001d011848_P001 | Maize | nucleus | 31.58 | 62.79 |
| Zm00001d049547_P001 | Maize | cytosol | 36.26 | 60.19 |
| CDY28886 | Canola | extracellular | 81.87 | 59.57 |
| Zm00001d038017_P001 | Maize | nucleus | 21.05 | 59.02 |
| GSMUA_Achr11P... | Banana | mitochondrion | 84.21 | 58.78 |
Protein Annotations
| EntrezGene:100272465 | MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | UniProt:B4FNT0 | EMBL:BT038768 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR036394 | HAMAP:MF_01331_A | ProteinID:ONM03205.1 |
| ProteinID:ONM03208.1 | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF18 | InterPro:Ribosomal_L22 |
| InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI00017B6D29 |
| EnsemblPlantsGene:Zm00001d031611 | EnsemblPlants:Zm00001d031611_P001 | EnsemblPlants:Zm00001d031611_T001 | : | : | : |
Description
ribosomal protein L17c
Coordinates
chr1:-:196150569..196153475
Molecular Weight (calculated)
19497.5 Da
IEP (calculated)
10.895
GRAVY (calculated)
-0.802
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSQEPGN PTKSAKAMGR DLRVHFKNTR ETAFALRKLS LTKAKRYLED VIAHKQAIPF RRYCGGVGRT AQAKSRHSNG QGRWPVKSAR FILDLLKNAE
101: SNADVKGLDV DNLYVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EADNIVAARK Q
101: SNADVKGLDV DNLYVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EADNIVAARK Q
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.