Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 67.34 | 78.36 |
| Zm00001d031611_P001 | Maize | cytosol | 62.81 | 73.1 |
| Zm00001d049815_P002 | Maize | cytosol | 62.31 | 72.51 |
| Os09t0258600-01 | Rice | nucleus | 62.31 | 72.51 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 58.29 | 68.24 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 58.29 | 68.24 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 57.79 | 67.65 |
| KRH31467 | Soybean | nucleus | 59.8 | 65.75 |
| KRG97436 | Soybean | nucleus | 59.3 | 65.19 |
| KRH08728 | Soybean | cytosol, nucleus | 53.77 | 63.69 |
| PGSC0003DMT400039421 | Potato | nucleus | 55.28 | 63.58 |
| KRH58763 | Soybean | nucleus | 57.79 | 63.54 |
| Solyc06g071870.2.1 | Tomato | nucleus | 55.78 | 63.43 |
| PGSC0003DMT400069384 | Potato | nucleus | 55.28 | 62.86 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 59.3 | 62.43 |
| AT1G67430.1 | Thale cress | nucleus | 54.77 | 62.29 |
| AT1G27400.1 | Thale cress | cytosol | 54.77 | 61.93 |
| Bra033999.1-P | Field mustard | nucleus | 54.27 | 61.71 |
| Bra032828.1-P | Field mustard | cytosol | 54.27 | 61.36 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 41.21 | 60.74 |
| KRH42661 | Soybean | nucleus | 57.29 | 60.32 |
| Zm00001d010009_P003 | Maize | cytosol | 64.32 | 60.09 |
| Solyc06g071880.2.1 | Tomato | cytosol | 41.21 | 59.85 |
| Bra004225.1-P | Field mustard | nucleus | 52.26 | 59.43 |
| HORVU5Hr1G052280.2 | Barley | plastid | 57.79 | 58.97 |
| CDY27616 | Canola | cytosol | 53.77 | 57.84 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 55.28 | 57.59 |
| Zm00001d038017_P001 | Maize | nucleus | 17.59 | 57.38 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 55.78 | 56.63 |
| CDX90084 | Canola | endoplasmic reticulum | 54.77 | 56.48 |
| CDY07422 | Canola | mitochondrion | 57.29 | 56.44 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 57.29 | 55.88 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 60.8 | 55.5 |
| CDY03920 | Canola | extracellular, mitochondrion | 54.27 | 55.38 |
| CDY56187 | Canola | mitochondrion | 55.28 | 55.28 |
| CDY12646 | Canola | cytosol, plastid | 55.78 | 55.22 |
| CDY01809 | Canola | extracellular | 55.78 | 54.68 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 57.29 | 54.55 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 33.17 | 53.66 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 62.31 | 53.22 |
| Bra010943.1-P | Field mustard | cytosol | 54.27 | 53.2 |
| CDY15709 | Canola | extracellular | 56.28 | 52.83 |
| CDY51350 | Canola | cytosol, plastid | 55.78 | 52.11 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 55.78 | 51.63 |
| GSMUA_Achr11P... | Banana | mitochondrion | 59.3 | 48.16 |
| CDY28886 | Canola | extracellular | 56.78 | 48.09 |
| Zm00001d049547_P001 | Maize | cytosol | 22.11 | 42.72 |
| Zm00001d003788_P001 | Maize | cytosol | 18.59 | 42.05 |
| Zm00001d011848_P001 | Maize | nucleus | 17.59 | 40.7 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | UniProt:A0A1D6L239 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 |
| GO:GO:0030529 | InterPro:IPR036394 | ProteinID:ONM08569.1 | PFAM:PF00237 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 |
| InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI000844108F |
| EnsemblPlantsGene:Zm00001d033767 | EnsemblPlants:Zm00001d033767_P002 | EnsemblPlants:Zm00001d033767_T002 | : | : | : |
Description
60S ribosomal protein L17-2
Coordinates
chr1:-:273087151..273089867
Molecular Weight (calculated)
22185.5 Da
IEP (calculated)
10.376
GRAVY (calculated)
-0.652
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSTAPTPDQ SDPKTRIHNL SRCYHRGFLL YPSLASPSQE YLNSASRPPP SLVSAMVKYS TEPTNPTKSA KAMGRDLHVH FKNTRETAFA LRKLSLTKAK
101: SYLEDVIAHK QAIPFRRYCG GVGRTAQAKS RHSNGQGRWP VKSARFILDL LKNAESNAEV CNSSLRSYMS SPCHIELILS EKEEPVKKEA ESQIATRKA
101: SYLEDVIAHK QAIPFRRYCG GVGRTAQAKS RHSNGQGRWP VKSARFILDL LKNAESNAEV CNSSLRSYMS SPCHIELILS EKEEPVKKEA ESQIATRKA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAELILSEK EEPVKKEPET QLAAKSKKSA A
101: SNAELILSEK EEPVKKEPET QLAAKSKKSA A
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.