CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58763	Soybean	nucleus	93.45	86.74
KRG97436	Soybean	nucleus	92.86	86.19
KRH31467	Soybean	nucleus	91.67	85.08
PGSC0003DMT400039421	Potato	nucleus	86.31	83.81
EES19208	Sorghum	cytosol	85.12	83.63
KRH42661	Soybean	nucleus	93.45	83.07
Solyc03g111230.2.1	Tomato	nucleus, unclear	66.67	82.96
Zm00001d049815_P002	Maize	cytosol	83.93	82.46
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	83.93	82.46
Os09t0258600-01	Rice	nucleus	83.93	82.46
EER90536	Sorghum	nucleus	83.93	82.46
EER90537	Sorghum	nucleus	83.93	82.46
Zm00001d031611_P001	Maize	cytosol	83.33	81.87
AT1G27400.1	Thale cress	cytosol	85.71	81.82
AT1G67430.1	Thale cress	nucleus	85.12	81.71
Solyc06g071870.2.1	Tomato	nucleus	85.12	81.71
Bra033999.1-P	Field mustard	nucleus	85.12	81.71
Bra032828.1-P	Field mustard	cytosol	85.12	81.25
TraesCS5D01G174700.1	Wheat	cytosol	82.14	81.18
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	82.14	81.18
PGSC0003DMT400069384	Potato	nucleus	84.52	81.14
Solyc06g071880.2.1	Tomato	cytosol	66.07	81.02
TraesCS5A01G170300.1	Wheat	cytosol	81.55	80.59
TraesCS7D01G260500.1	Wheat	cytosol	82.14	80.23
TraesCS7B01G157300.1	Wheat	golgi, unclear	82.14	80.23
Os08t0530200-01	Rice	nucleus	81.55	80.12
TraesCS7A01G259500.1	Wheat	cytosol	81.55	79.65
Bra004225.1-P	Field mustard	nucleus	82.74	79.43
GSMUA_Achr4P16010_001	Banana	nucleus	82.74	73.55
VIT_01s0010g03370.t01	Wine grape	plastid	88.1	72.55
VIT_17s0000g01520.t01	Wine grape	cytosol	88.1	70.81
HORVU5Hr1G052280.2	Barley	plastid	82.14	70.77
Bra010943.1-P	Field mustard	cytosol	85.12	70.44
VIT_18s0001g05140.t01	Wine grape	cytosol	51.19	69.92
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	88.1	68.84
HORVU7Hr1G054010.2	Barley	mitochondrion	81.55	68.5
GSMUA_Achr5P14560_001	Banana	cytosol	83.33	64.22
OQU80827	Sorghum	cytosol	70.24	63.1
Zm00001d010009_P003	Maize	cytosol	77.98	61.5
GSMUA_Achr5P18680_001	Banana	cytosol	83.33	60.09
GSMUA_Achr11P...	Banana	mitochondrion	82.14	56.33
CDX91455	Canola	cytosol	21.43	55.38
Zm00001d033767_P002	Maize	nucleus	63.69	53.77
Zm00001d003788_P001	Maize	cytosol	27.98	53.41
Zm00001d011848_P001	Maize	nucleus	26.79	52.33
Zm00001d049547_P001	Maize	cytosol	30.36	49.51
Zm00001d038017_P001	Maize	nucleus	17.26	47.54
CDY50115	Canola	cytosol	23.21	42.39
CDY65682	Canola	cytosol	22.62	42.22
CDY50459	Canola	extracellular, plasma membrane	18.45	40.26
CDY24443	Canola	cytosol	44.05	27.92

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:ACUP02010200	EnsemblPlantsGene:GLYMA_16G169800	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394	UniProt:K7MHT6	EnsemblPlants:KRH08728	ProteinID:KRH08728
ProteinID:KRH08728.1	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	UniParc:UPI0002968EA4

Description

hypothetical protein

Coordinates

chr16:-:32978993..32979520

Molecular Weight (calculated)

19356.4 Da

IEP (calculated)

10.891

GRAVY (calculated)

-0.673

Length

168 amino acids

Sequence
(BLAST)

001: MVKYSREPDN PTKSCKARGA DLRVHFKNTR ETAFAIRKLP LVKAKRYLED VLAHKQAIPF RRFCRGVGRT AHAKNRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DALYISHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEDFIS FATLNTRV

Best Arabidopsis Sequence Match ( ATCG00810.1 )
(BLAST)

001: MIKKRKKKSY TEVYALGQYI SMSAHKARRV IDQIRGRSYE EALMILELMP YRGCYPIFKL VYSAAANASH NKGFKETNLV ISKAEVNQGN TVKKLKPRAR
101: GRSYPIKRST CHITIVLEDI SFYQQYEEYL MYLKKPGCSN ENRNLTCYDT YSSGGLWDKK

Arabidopsis Description

RPL2250S ribosomal protein L22, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56795]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.