CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90537	Sorghum	nucleus	99.42	99.42
EES19208	Sorghum	cytosol	95.32	95.32
KRH31467	Soybean	nucleus	88.89	83.98
KRG97436	Soybean	nucleus	88.89	83.98
KRH08728	Soybean	cytosol, nucleus	82.46	83.93
Solyc03g111230.2.1	Tomato	nucleus, unclear	65.5	82.96
KRH58763	Soybean	nucleus	87.13	82.32
Solyc06g071880.2.1	Tomato	cytosol	65.5	81.75
AT1G67430.1	Thale cress	nucleus	83.63	81.71
PGSC0003DMT400039421	Potato	nucleus	82.46	81.5
AT1G27400.1	Thale cress	cytosol	83.63	81.25
Bra033999.1-P	Field mustard	nucleus	83.04	81.14
Bra032828.1-P	Field mustard	cytosol	83.04	80.68
Solyc06g071870.2.1	Tomato	nucleus	82.46	80.57
PGSC0003DMT400069384	Potato	nucleus	81.87	80.0
GSMUA_Achr4P16010_001	Banana	nucleus	88.3	79.89
Bra004225.1-P	Field mustard	nucleus	80.7	78.86
KRH42661	Soybean	nucleus	86.55	78.31
CDY27616	Canola	cytosol	82.46	76.22
CDY11812	Canola	cytosol, nucleus, plastid	83.04	74.35
CDX90084	Canola	endoplasmic reticulum	83.63	74.09
CDX96093	Canola	endoplasmic reticulum, extracellular	83.04	72.45
CDY03920	Canola	extracellular, mitochondrion	82.46	72.31
CDY56187	Canola	mitochondrion	83.04	71.36
CDY12646	Canola	cytosol, plastid	83.04	70.65
VIT_01s0010g03370.t01	Wine grape	plastid	84.21	70.59
CDY07422	Canola	mitochondrion	83.04	70.3
GSMUA_Achr5P14560_001	Banana	cytosol	89.47	70.18
Bra010943.1-P	Field mustard	cytosol	83.04	69.95
CDY01809	Canola	extracellular	83.04	69.95
VIT_17s0000g01520.t01	Wine grape	cytosol	85.38	69.86
OQU80827	Sorghum	cytosol	75.44	68.98
CDY15709	Canola	extracellular	83.63	67.45
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	84.21	66.98
CDY51350	Canola	cytosol, plastid	83.04	66.67
GSMUA_Achr5P18680_001	Banana	cytosol	90.64	66.52
VIT_18s0001g05140.t01	Wine grape	cytosol	46.78	65.04
GSMUA_Achr11P...	Banana	mitochondrion	89.47	62.45
CDY28886	Canola	extracellular	83.04	60.43

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EntrezGene:8060894	UniProt:C5WT03	EnsemblPlants:EER90536	ProteinID:EER90536
ProteinID:EER90536.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394
HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	EnsemblPlantsGene:SORBI_3001G016400	SUPFAM:SSF54843	TIGRFAMs:TIGR01038
UniParc:UPI0001A8254C	RefSeq:XP_002463538.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1428305..1431270

Molecular Weight (calculated)

19518.5 Da

IEP (calculated)

10.930

GRAVY (calculated)

-0.830

Length

171 amino acids

Sequence
(BLAST)

001: MVKYSREPSN PTKSAKAMGR DLRVHFKNTR ETAFAIRKLQ LSKAKRYLED VIAHKQAIPF RRYCGGVGRT AQAKSRHSNG QGRWPAKSAK FILDLLKNAE
101: SNAEVKGLDV DTLYVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELM LSEKEEPVKK EAETQIAARK A

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.