CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31467	Soybean	nucleus	95.58	95.58
KRH42661	Soybean	nucleus	98.89	94.71
KRH08728	Soybean	cytosol, nucleus	86.74	93.45
KRG97436	Soybean	nucleus	92.82	92.82
Solyc03g111230.2.1	Tomato	nucleus, unclear	66.85	89.63
AT1G27400.1	Thale cress	cytosol	86.74	89.2
Solyc06g071880.2.1	Tomato	cytosol	67.4	89.05
PGSC0003DMT400039421	Potato	nucleus	85.08	89.02
Bra032828.1-P	Field mustard	cytosol	86.19	88.64
EES19208	Sorghum	cytosol	83.43	88.3
Solyc06g071870.2.1	Tomato	nucleus	85.08	88.0
Os09t0258600-01	Rice	nucleus	82.87	87.72
PGSC0003DMT400069384	Potato	nucleus	84.53	87.43
AT1G67430.1	Thale cress	nucleus	84.53	87.43
EER90537	Sorghum	nucleus	82.32	87.13
EER90536	Sorghum	nucleus	82.32	87.13
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	82.32	87.13
Bra033999.1-P	Field mustard	nucleus	83.98	86.86
Zm00001d049815_P002	Maize	cytosol	81.77	86.55
Zm00001d031611_P001	Maize	cytosol	81.22	85.96
TraesCS5D01G174700.1	Wheat	cytosol	80.66	85.88
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	80.66	85.88
TraesCS5A01G170300.1	Wheat	cytosol	80.11	85.29
Bra004225.1-P	Field mustard	nucleus	82.32	85.14
TraesCS7D01G260500.1	Wheat	cytosol	80.11	84.3
TraesCS7B01G157300.1	Wheat	golgi, unclear	80.11	84.3
GSMUA_Achr4P16010_001	Banana	nucleus	87.85	84.13
TraesCS7A01G259500.1	Wheat	cytosol	79.56	83.72
Os08t0530200-01	Rice	nucleus	79.01	83.63
VIT_01s0010g03370.t01	Wine grape	plastid	92.27	81.86
VIT_17s0000g01520.t01	Wine grape	cytosol	91.16	78.95
Bra010943.1-P	Field mustard	cytosol	86.74	77.34
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	90.06	75.81
HORVU5Hr1G052280.2	Barley	plastid	80.66	74.87
GSMUA_Achr5P14560_001	Banana	cytosol	87.85	72.94
HORVU7Hr1G054010.2	Barley	mitochondrion	79.56	72.0
VIT_18s0001g05140.t01	Wine grape	cytosol	48.07	70.73
GSMUA_Achr5P18680_001	Banana	cytosol	87.85	68.24
OQU80827	Sorghum	cytosol	67.4	65.24
Zm00001d010009_P003	Maize	cytosol	76.24	64.79
Zm00001d003788_P001	Maize	cytosol	29.83	61.36
GSMUA_Achr11P...	Banana	mitochondrion	82.32	60.82
Zm00001d011848_P001	Maize	nucleus	28.73	60.47
Zm00001d038017_P001	Maize	nucleus	19.89	59.02
Zm00001d033767_P002	Maize	nucleus	63.54	57.79
Zm00001d049547_P001	Maize	cytosol	32.04	56.31
CDX91455	Canola	cytosol	19.34	53.85
CDY50115	Canola	cytosol	22.1	43.48
CDY50459	Canola	extracellular, plasma membrane	18.23	42.86
CDY65682	Canola	cytosol	19.89	40.0
CDY24443	Canola	cytosol	41.99	28.68

Protein Annotations

EntrezGene:100499784	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:ACUP02003289	EMBL:BT089512	UniProt:C6SWG9
EnsemblPlantsGene:GLYMA_05G146800	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394
EnsemblPlants:KRH58763	ProteinID:KRH58763	ProteinID:KRH58763.1	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464
PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf
SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI0001B14F04	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:34062669..34065648

Molecular Weight (calculated)

20622.9 Da

IEP (calculated)

10.982

GRAVY (calculated)

-0.820

Length

181 amino acids

Sequence
(BLAST)

001: MVKYSREPDN PTKSCKARGA DLRVHFKNTR ETAFAIRKLP LVKAKRYLED VLAHKQAIPF RRFCRGVGRT AQAKNRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DALYISHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EPETKLATSK KSQALRSGTS S

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.