Factsheet for VIT_01s0010g03370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58763	Soybean	nucleus	81.86	92.27
KRH31467	Soybean	nucleus	80.39	90.61
Solyc03g111230.2.1	Tomato	nucleus, unclear	59.31	89.63
PGSC0003DMT400039421	Potato	nucleus	75.98	89.6
Solyc06g071880.2.1	Tomato	cytosol	59.8	89.05
Solyc06g071870.2.1	Tomato	nucleus	75.98	88.57
KRG97436	Soybean	nucleus	78.43	88.4
KRH42661	Soybean	nucleus	81.86	88.36
KRH08728	Soybean	cytosol, nucleus	72.55	88.1
AT1G27400.1	Thale cress	cytosol	75.98	88.07
PGSC0003DMT400069384	Potato	nucleus	75.49	88.0
Bra032828.1-P	Field mustard	cytosol	75.49	87.5
AT1G67430.1	Thale cress	nucleus	74.02	86.29
Bra033999.1-P	Field mustard	nucleus	73.53	85.71
EES19208	Sorghum	cytosol	71.57	85.38
Os09t0258600-01	Rice	nucleus	71.08	84.8
Zm00001d049815_P002	Maize	cytosol	70.59	84.21
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	70.59	84.21
EER90536	Sorghum	nucleus	70.59	84.21
EER90537	Sorghum	nucleus	70.59	84.21
Bra004225.1-P	Field mustard	nucleus	72.06	84.0
Zm00001d031611_P001	Maize	cytosol	70.1	83.63
CDY27616	Canola	cytosol	75.49	83.24
TraesCS5D01G174700.1	Wheat	cytosol	68.63	82.35
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	68.63	82.35
TraesCS5A01G170300.1	Wheat	cytosol	68.63	82.35
GSMUA_Achr4P16010_001	Banana	nucleus	75.98	82.01
CDY11812	Canola	cytosol, nucleus, plastid	76.47	81.68
CDX90084	Canola	endoplasmic reticulum	76.47	80.83
TraesCS7B01G157300.1	Wheat	golgi, unclear	68.14	80.81
TraesCS7D01G260500.1	Wheat	cytosol	68.14	80.81
Os08t0530200-01	Rice	nucleus	67.65	80.7
VIT_17s0000g01520.t01	Wine grape	cytosol	82.35	80.38
TraesCS7A01G259500.1	Wheat	cytosol	67.65	80.23
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	84.31	80.0
CDY03920	Canola	extracellular, mitochondrion	75.49	78.97
CDY12646	Canola	cytosol, plastid	76.96	78.11
CDX96093	Canola	endoplasmic reticulum, extracellular	75.0	78.06
CDY56187	Canola	mitochondrion	75.98	77.89
CDY07422	Canola	mitochondrion	76.47	77.23
VIT_18s0001g05140.t01	Wine grape	cytosol	45.59	75.61
Bra010943.1-P	Field mustard	cytosol	75.0	75.37
CDY01809	Canola	extracellular	74.51	74.88
CDY15709	Canola	extracellular	76.96	74.06
CDY51350	Canola	cytosol, plastid	76.96	73.71
HORVU5Hr1G052280.2	Barley	plastid	69.61	72.82
GSMUA_Achr5P14560_001	Banana	cytosol	75.49	70.64
HORVU7Hr1G054010.2	Barley	mitochondrion	67.65	69.0
GSMUA_Achr5P18680_001	Banana	cytosol	77.45	67.81
CDY28886	Canola	extracellular	76.47	66.38
OQU80827	Sorghum	cytosol	57.84	63.1
Zm00001d010009_P003	Maize	cytosol	65.2	62.44
GSMUA_Achr11P...	Banana	mitochondrion	72.06	60.0
Zm00001d011848_P001	Maize	nucleus	25.0	59.3
Zm00001d003788_P001	Maize	cytosol	25.49	59.09
Zm00001d038017_P001	Maize	nucleus	17.16	57.38
Zm00001d033767_P002	Maize	nucleus	55.88	57.29
Zm00001d049547_P001	Maize	cytosol	27.45	54.37

Protein Annotations

EntrezGene:100257483	wikigene:100257483	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:AM445900	ProteinID:CAN74145
ProteinID:CAN74145.1	ProteinID:CBI27629	ProteinID:CBI27629.3	UniProt:D7TAV6	EMBL:FN595754	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394	EntrezGene:LOC100257483	wikigene:LOC100257483
HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGR:TC51988	TIGRFAMs:TIGR01038
UniParc:UPI0001BE3194	ArrayExpress:VIT_01s0010g03370	EnsemblPlantsGene:VIT_01s0010g03370	EnsemblPlants:VIT_01s0010g03370.t01	unigene:Vvi.24710	RefSeq:XP_002279293
RefSeq:XP_002279293.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:20703800..20708466

Molecular Weight (calculated)

23126.9 Da

IEP (calculated)

10.602

GRAVY (calculated)

-0.659

Length

204 amino acids

Sequence
(BLAST)

001: MVISHLCISC PFSYYISQLS AMVKYSREPD NPTKSCKARG LDLRVHFKNT RETAHAIRKL PLAKAKRYLE DVLVHKQAIP FTRFCRGVGR TAQAKNRHSN
101: GQGRWPVKSA KYILDLLKNA ESNADLKGLD VDSLYISHIQ VNQAQKQRRR TYRAHGRINP YMSSPCHIEL ILSEKEEPVK KEPETQLATS KSKKSHAVRG
201: GASS

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.