Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032828.1-P | Field mustard | cytosol | 88.44 | 100.0 |
| AT1G27400.1 | Thale cress | cytosol | 87.44 | 98.86 |
| CDY27616 | Canola | cytosol | 88.94 | 95.68 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 88.44 | 92.15 |
| CDX90084 | Canola | endoplasmic reticulum | 88.94 | 91.71 |
| CDY03920 | Canola | extracellular, mitochondrion | 86.43 | 88.21 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 86.43 | 87.76 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 59.3 | 87.41 |
| Solyc06g071880.2.1 | Tomato | cytosol | 59.8 | 86.86 |
| PGSC0003DMT400039421 | Potato | nucleus | 74.87 | 86.13 |
| Solyc06g071870.2.1 | Tomato | nucleus | 75.38 | 85.71 |
| PGSC0003DMT400069384 | Potato | nucleus | 74.87 | 85.14 |
| CDY12646 | Canola | cytosol, plastid | 85.93 | 85.07 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 72.36 | 84.71 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 72.36 | 84.71 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 72.36 | 84.71 |
| CDY07422 | Canola | mitochondrion | 85.93 | 84.65 |
| CDY15709 | Canola | extracellular | 89.95 | 84.43 |
| CDY01809 | Canola | extracellular | 85.93 | 84.24 |
| Os09t0258600-01 | Rice | nucleus | 72.36 | 84.21 |
| EER90536 | Sorghum | nucleus | 71.36 | 83.04 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 71.36 | 82.56 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 71.36 | 82.56 |
| Zm00001d049815_P002 | Maize | cytosol | 70.85 | 82.46 |
| EER90537 | Sorghum | nucleus | 70.85 | 82.46 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 70.85 | 81.98 |
| Zm00001d031611_P001 | Maize | cytosol | 70.35 | 81.87 |
| EES19208 | Sorghum | cytosol | 70.35 | 81.87 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 69.85 | 81.29 |
| Os08t0530200-01 | Rice | nucleus | 69.35 | 80.7 |
| CDY51350 | Canola | cytosol, plastid | 85.43 | 79.81 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 74.37 | 78.31 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 77.89 | 75.98 |
| HORVU5Hr1G052280.2 | Barley | plastid | 72.36 | 73.85 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 77.39 | 73.68 |
| CDY28886 | Canola | extracellular | 85.93 | 72.77 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 77.39 | 71.63 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 71.86 | 71.5 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 75.88 | 69.27 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 41.71 | 67.48 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 76.38 | 65.24 |
| Zm00001d010009_P003 | Maize | cytosol | 65.83 | 61.5 |
| OQU80827 | Sorghum | cytosol | 57.29 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 74.87 | 60.82 |
| CDX91455 | Canola | cytosol | 18.09 | 55.38 |
| Zm00001d033767_P002 | Maize | nucleus | 55.28 | 55.28 |
| Zm00001d003788_P001 | Maize | cytosol | 24.12 | 54.55 |
| Zm00001d011848_P001 | Maize | nucleus | 23.12 | 53.49 |
| Zm00001d038017_P001 | Maize | nucleus | 16.08 | 52.46 |
| Zm00001d049547_P001 | Maize | cytosol | 25.63 | 49.51 |
| CDY50459 | Canola | extracellular, plasma membrane | 17.59 | 45.45 |
| CDY50115 | Canola | cytosol | 20.6 | 44.57 |
| CDY65682 | Canola | cytosol | 18.59 | 41.11 |
| CDY24443 | Canola | cytosol | 40.7 | 30.57 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:A0A078IZU5 | UniProt:A0A078IZU5 | EnsemblPlants:CDY56187 | ProteinID:CDY56187 |
| ProteinID:CDY56187.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00017959001 |
| InterPro:IPR036394 | HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 |
| InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | SignalP:SignalP-noTM |
| TIGRFAMs:TIGR01038 | UniParc:UPI0004EEB667 | SEG:seg | : | : | : |
Description
BnaC05g51070DBnaC05g51070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZU5]
Coordinates
chrLK033467:+:29657..31366
Molecular Weight (calculated)
22591.3 Da
IEP (calculated)
10.775
GRAVY (calculated)
-0.609
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYIYLTTAF RSLLLRQLTC FAAMVKYSQE PDNSTKSCKA RGADLRVHFK NTRETAHAIR RLPLNKAKRY LEDVIAHKQA IPFTRFCRGV GRTAQAKNRH
101: SNGQGRWPAK SAQFVLDLLK NAESNAEVKG LDVDALFISH IQVNQAAKQR RRTYRAHGRI NPYMSNPCHI ELILSEKEEP VKKEPETQLA AKSKKGASS
101: SNGQGRWPAK SAQFVLDLLK NAESNAEVKG LDVDALFISH IQVNQAAKQR RRTYRAHGRI NPYMSNPCHI ELILSEKEEP VKKEPETQLA AKSKKGASS
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.