CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G67430.1	Thale cress	nucleus	73.19	98.29
CDY07422	Canola	mitochondrion	83.83	97.52
CDX96093	Canola	endoplasmic reticulum, extracellular	76.17	91.33
CDY27616	Canola	cytosol	70.64	89.73
CDY12646	Canola	cytosol, plastid	76.6	89.55
CDY11812	Canola	cytosol, nucleus, plastid	72.34	89.01
CDY01809	Canola	extracellular	76.6	88.67
Solyc03g111230.2.1	Tomato	nucleus, unclear	50.64	88.15
PGSC0003DMT400039421	Potato	nucleus	64.68	87.86
CDX90084	Canola	endoplasmic reticulum	71.91	87.56
Solyc06g071870.2.1	Tomato	nucleus	64.26	86.29
Solyc06g071880.2.1	Tomato	cytosol	50.21	86.13
CDY56187	Canola	mitochondrion	72.77	85.93
PGSC0003DMT400069384	Potato	nucleus	63.83	85.71
CDY03920	Canola	extracellular, mitochondrion	70.21	84.62
CDY51350	Canola	cytosol, plastid	76.6	84.51
Os09t0258600-01	Rice	nucleus	61.28	84.21
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	60.85	84.12
TraesCS5D01G174700.1	Wheat	cytosol	60.85	84.12
TraesCS5A01G170300.1	Wheat	cytosol	60.85	84.12
EER90536	Sorghum	nucleus	60.43	83.04
Zm00001d049815_P002	Maize	cytosol	60.0	82.46
EER90537	Sorghum	nucleus	60.0	82.46
EES19208	Sorghum	cytosol	59.57	81.87
Zm00001d031611_P001	Maize	cytosol	59.57	81.87
TraesCS7D01G260500.1	Wheat	cytosol	59.57	81.4
TraesCS7B01G157300.1	Wheat	golgi, unclear	59.57	81.4
Os08t0530200-01	Rice	nucleus	59.15	81.29
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	59.15	81.29
CDY15709	Canola	extracellular	73.19	81.13
TraesCS7A01G259500.1	Wheat	cytosol	59.15	80.81
VIT_01s0010g03370.t01	Wine grape	plastid	66.38	76.47
GSMUA_Achr4P16010_001	Banana	nucleus	61.28	76.19
HORVU5Hr1G052280.2	Barley	plastid	62.13	74.87
VIT_17s0000g01520.t01	Wine grape	cytosol	64.68	72.73
HORVU7Hr1G054010.2	Barley	mitochondrion	60.85	71.5
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	65.11	71.16
GSMUA_Achr5P14560_001	Banana	cytosol	62.98	67.89
VIT_18s0001g05140.t01	Wine grape	cytosol	35.32	67.48
GSMUA_Achr5P18680_001	Banana	cytosol	65.11	65.67
GSMUA_Achr11P...	Banana	mitochondrion	65.11	62.45
Zm00001d010009_P003	Maize	cytosol	55.74	61.5
OQU80827	Sorghum	cytosol	48.51	60.96
Zm00001d033767_P002	Maize	nucleus	48.09	56.78
CDX91455	Canola	cytosol	15.32	55.38
Zm00001d003788_P001	Maize	cytosol	19.57	52.27
Zm00001d011848_P001	Maize	nucleus	18.72	51.16
Zm00001d038017_P001	Maize	nucleus	12.77	49.18
Zm00001d049547_P001	Maize	cytosol	21.28	48.54
CDY50459	Canola	extracellular, plasma membrane	15.32	46.75
CDY50115	Canola	cytosol	17.45	44.57
CDY65682	Canola	cytosol	15.74	41.11
CDY24443	Canola	cytosol	34.89	30.94

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:A0A078GTP4	UniProt:A0A078GTP4	EnsemblPlants:CDY28886	ProteinID:CDY28886
ProteinID:CDY28886.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00041571001
InterPro:IPR036394	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038
UniParc:UPI0004EDDCAC	SEG:seg	:	:	:	:

Description

BnaC06g26740DBnaC06g26740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTP4]

Coordinates

chrLK032227:-:382163..383747

Molecular Weight (calculated)

26920.6 Da

IEP (calculated)

10.932

GRAVY (calculated)

-0.633

Length

235 amino acids

Sequence
(BLAST)

001: MKNLKTHLIE IYFGLKQAHV DRKKNRFPLY FRVNAVSLYK VSSQLFSNRF CSRFLPLAAA MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP
101: LLKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY
201: MSNPCHIELI LSEKEESVKK EPETQLAAKS KKSSA

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.