Factsheet for Solyc03g111230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 2
cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071880.2.1	Tomato	cytosol	94.07	92.7
PGSC0003DMT400039421	Potato	nucleus	100.0	78.03
Solyc06g071870.2.1	Tomato	nucleus	94.07	72.57
Bra033999.1-P	Field mustard	nucleus	88.15	68.0
AT1G67430.1	Thale cress	nucleus	87.41	67.43
Os09t0258600-01	Rice	nucleus	85.19	67.25
Bra032828.1-P	Field mustard	cytosol	87.41	67.05
AT1G27400.1	Thale cress	cytosol	87.41	67.05
KRH58763	Soybean	nucleus	89.63	66.85
KRH08728	Soybean	cytosol, nucleus	82.96	66.67
EES19208	Sorghum	cytosol	84.44	66.67
KRG97436	Soybean	nucleus	88.89	66.3
TraesCS7D01G260500.1	Wheat	cytosol	84.44	66.28
TraesCS7B01G157300.1	Wheat	golgi, unclear	84.44	66.28
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	83.7	66.08
EER90537	Sorghum	nucleus	83.7	66.08
TraesCS5A01G170300.1	Wheat	cytosol	82.96	65.88
TraesCS5D01G174700.1	Wheat	cytosol	82.96	65.88
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	82.96	65.88
KRH31467	Soybean	nucleus	88.15	65.75
Bra004225.1-P	Field mustard	nucleus	85.19	65.71
TraesCS7A01G259500.1	Wheat	cytosol	83.7	65.7
Zm00001d049815_P002	Maize	cytosol	82.96	65.5
EER90536	Sorghum	nucleus	82.96	65.5
Zm00001d031611_P001	Maize	cytosol	82.22	64.91
KRH42661	Soybean	nucleus	89.63	64.02
CDY27616	Canola	cytosol	87.41	63.78
Os08t0530200-01	Rice	nucleus	80.74	63.74
GSMUA_Achr4P16010_001	Banana	nucleus	85.19	60.85
CDY11812	Canola	cytosol, nucleus, plastid	85.93	60.73
CDX96093	Canola	endoplasmic reticulum, extracellular	88.15	60.71
CDX90084	Canola	endoplasmic reticulum	86.67	60.62
CDY03920	Canola	extracellular, mitochondrion	86.67	60.0
VIT_01s0010g03370.t01	Wine grape	plastid	89.63	59.31
CDY56187	Canola	mitochondrion	87.41	59.3
CDY12646	Canola	cytosol, plastid	88.15	59.2
CDY07422	Canola	mitochondrion	88.15	58.91
CDY01809	Canola	extracellular	88.15	58.62
HORVU5Hr1G052280.2	Barley	plastid	83.7	57.95
Bra010943.1-P	Field mustard	cytosol	86.67	57.64
VIT_17s0000g01520.t01	Wine grape	cytosol	88.89	57.42
HORVU7Hr1G054010.2	Barley	mitochondrion	84.44	57.0
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	90.37	56.74
CDY51350	Canola	cytosol, plastid	88.15	55.87
Zm00001d003788_P001	Maize	cytosol	36.3	55.68
CDY15709	Canola	extracellular	87.41	55.66
Zm00001d011848_P001	Maize	nucleus	34.81	54.65
GSMUA_Achr5P14560_001	Banana	cytosol	87.41	54.13
Zm00001d010009_P003	Maize	cytosol	83.7	53.05
Zm00001d038017_P001	Maize	nucleus	22.96	50.82
CDY28886	Canola	extracellular	88.15	50.64
GSMUA_Achr5P18680_001	Banana	cytosol	85.19	49.36
OQU80827	Sorghum	cytosol	68.15	49.2
VIT_18s0001g05140.t01	Wine grape	cytosol	44.44	48.78
Zm00001d049547_P001	Maize	cytosol	35.56	46.6
GSMUA_Achr11P...	Banana	mitochondrion	84.44	46.53
Zm00001d033767_P002	Maize	nucleus	60.74	41.21

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
InterPro:IPR036394	UniProt:K4BJY6	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	EnsemblPlantsGene:Solyc03g111230.2
EnsemblPlants:Solyc03g111230.2.1	TIGRFAMs:TIGR01038	UniParc:UPI00005CA270	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:61856246..61857399

Molecular Weight (calculated)

15414.5 Da

IEP (calculated)

10.467

GRAVY (calculated)

-0.799

Length

135 amino acids

Sequence
(BLAST)

001: MPLDKAKRYL EDVLAHKQAI PFTRFCRGVG RTAQAKNRHS NGQGRWPVKS AGFILDLLKN AESNAEVKGL DVDSLYISHI QVNEAQKQRR RTYRAHGRIN
101: PYMSHPCHIE LILSEKEESV KKEPETQLAP RKAKA

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.