Factsheet for Os08t0530200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049815_P002	Maize	cytosol	90.06	90.06
Zm00001d031611_P001	Maize	cytosol	89.47	89.47
Os09t0258600-01	Rice	nucleus	88.3	88.3
TraesCS7D01G260500.1	Wheat	cytosol	84.21	83.72
TraesCS7B01G157300.1	Wheat	golgi, unclear	84.21	83.72
TraesCS7A01G259500.1	Wheat	cytosol	83.63	83.14
KRH08728	Soybean	cytosol, nucleus	80.12	81.55
Solyc03g111230.2.1	Tomato	nucleus, unclear	63.74	80.74
PGSC0003DMT400039421	Potato	nucleus	80.7	79.77
AT1G67430.1	Thale cress	nucleus	81.29	79.43
Bra033999.1-P	Field mustard	nucleus	81.29	79.43
KRH58763	Soybean	nucleus	83.63	79.01
KRH31467	Soybean	nucleus	83.63	79.01
KRG97436	Soybean	nucleus	83.63	79.01
AT1G27400.1	Thale cress	cytosol	81.29	78.98
Bra032828.1-P	Field mustard	cytosol	80.7	78.41
Solyc06g071870.2.1	Tomato	nucleus	80.12	78.29
Solyc06g071880.2.1	Tomato	cytosol	62.57	78.1
PGSC0003DMT400069384	Potato	nucleus	79.53	77.71
GSMUA_Achr4P16010_001	Banana	nucleus	85.38	77.25
Bra004225.1-P	Field mustard	nucleus	78.95	77.14
KRH42661	Soybean	nucleus	83.04	75.13
CDY27616	Canola	cytosol	80.12	74.05
CDY11812	Canola	cytosol, nucleus, plastid	80.7	72.25
CDX90084	Canola	endoplasmic reticulum	81.29	72.02
HORVU7Hr1G054010.2	Barley	mitochondrion	83.63	71.5
CDX96093	Canola	endoplasmic reticulum, extracellular	81.29	70.92
CDY03920	Canola	extracellular, mitochondrion	80.7	70.77
CDY56187	Canola	mitochondrion	80.7	69.35
CDY12646	Canola	cytosol, plastid	81.29	69.15
CDY07422	Canola	mitochondrion	81.29	68.81
CDY01809	Canola	extracellular	81.29	68.47
Bra010943.1-P	Field mustard	cytosol	80.7	67.98
VIT_01s0010g03370.t01	Wine grape	plastid	80.7	67.65
GSMUA_Achr5P14560_001	Banana	cytosol	85.96	67.43
OQU80827	Sorghum	cytosol	73.68	67.38
VIT_17s0000g01520.t01	Wine grape	cytosol	81.87	66.99
CDY15709	Canola	extracellular	81.29	65.57
CDY51350	Canola	cytosol, plastid	81.29	65.26
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	80.7	64.19
GSMUA_Achr5P18680_001	Banana	cytosol	87.13	63.95
Zm00001d003788_P001	Maize	cytosol	30.99	60.23
VIT_18s0001g05140.t01	Wine grape	cytosol	43.27	60.16
GSMUA_Achr11P...	Banana	mitochondrion	85.96	60.0
Zm00001d011848_P001	Maize	nucleus	29.82	59.3
CDY28886	Canola	extracellular	81.29	59.15
Zm00001d049547_P001	Maize	cytosol	33.92	56.31
Zm00001d038017_P001	Maize	nucleus	19.88	55.74

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EntrezGene:4346123	EMBL:AK062052	EMBL:AK120448	ProteinID:BAD09020.1
ProteinID:BAD09119.1	ProteinID:BAF24238.1	ProteinID:BAT06387.1	ProteinID:EEE69048.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:IPR036394	HAMAP:MF_01331_A	EnsemblPlantsGene:Os08g0530200	EnsemblPlants:Os08t0530200-01	PFAM:PF00237
ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF18	UniProt:Q6ZIA1	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI000023ACC1	RefSeq:XP_015648317.1

Description

Similar to 60S ribosomal protein L17. (Os08t0530200-01);Similar to 60S ribosomal protein L17. (Os08t0530200-02)

Coordinates

chr8:-:26406032..26408527

Molecular Weight (calculated)

19484.5 Da

IEP (calculated)

11.019

GRAVY (calculated)

-0.806

Length

171 amino acids

Sequence
(BLAST)

001: MGKYSTEPSN PTKSAKAMGR DLRVHFKNTR ETAFALRKLP LVKAKRYLED VIAHKQAIPF RRYCGGVGRT AQVKSRQSNG QGRWPAKSAR FILDLLKNAE
101: SNADVKGLDV DNLFVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHVELI LSEKEEAVKK EPETTIAPRR Q

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.