Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G67430.1 | Thale cress | nucleus | 87.76 | 98.29 |
| Bra004225.1-P | Field mustard | nucleus | 86.73 | 97.14 |
| CDY27616 | Canola | cytosol | 84.69 | 89.73 |
| CDY01809 | Canola | extracellular | 92.86 | 89.66 |
| CDY07422 | Canola | mitochondrion | 92.35 | 89.6 |
| CDY12646 | Canola | cytosol, plastid | 90.82 | 88.56 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 86.22 | 88.48 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 60.71 | 88.15 |
| PGSC0003DMT400039421 | Potato | nucleus | 77.55 | 87.86 |
| CDX90084 | Canola | endoplasmic reticulum | 86.22 | 87.56 |
| CDY56187 | Canola | mitochondrion | 87.76 | 86.43 |
| Solyc06g071870.2.1 | Tomato | nucleus | 76.53 | 85.71 |
| Solyc06g071880.2.1 | Tomato | cytosol | 59.69 | 85.4 |
| PGSC0003DMT400069384 | Potato | nucleus | 76.02 | 85.14 |
| Os09t0258600-01 | Rice | nucleus | 73.47 | 84.21 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 72.96 | 84.12 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 72.96 | 84.12 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 72.96 | 84.12 |
| CDY03920 | Canola | extracellular, mitochondrion | 83.67 | 84.1 |
| CDY51350 | Canola | cytosol, plastid | 90.31 | 83.1 |
| EER90536 | Sorghum | nucleus | 72.45 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 71.94 | 82.46 |
| EER90537 | Sorghum | nucleus | 71.94 | 82.46 |
| Zm00001d031611_P001 | Maize | cytosol | 71.43 | 81.87 |
| EES19208 | Sorghum | cytosol | 71.43 | 81.87 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 71.43 | 81.4 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 71.43 | 81.4 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 70.92 | 81.29 |
| Os08t0530200-01 | Rice | nucleus | 70.92 | 81.29 |
| CDY15709 | Canola | extracellular | 87.76 | 81.13 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 70.92 | 80.81 |
| CDY28886 | Canola | extracellular | 91.33 | 76.17 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 72.96 | 75.66 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 78.06 | 75.0 |
| HORVU5Hr1G052280.2 | Barley | plastid | 73.47 | 73.85 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 77.04 | 72.25 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 78.06 | 71.16 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 71.94 | 70.5 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 75.51 | 67.89 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 42.35 | 67.48 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 76.53 | 64.38 |
| Zm00001d010009_P003 | Maize | cytosol | 66.33 | 61.03 |
| OQU80827 | Sorghum | cytosol | 58.16 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 75.51 | 60.41 |
| Zm00001d033767_P002 | Maize | nucleus | 56.63 | 55.78 |
| CDX91455 | Canola | cytosol | 18.37 | 55.38 |
| Zm00001d003788_P001 | Maize | cytosol | 23.47 | 52.27 |
| Zm00001d011848_P001 | Maize | nucleus | 22.45 | 51.16 |
| Zm00001d038017_P001 | Maize | nucleus | 15.31 | 49.18 |
| Zm00001d049547_P001 | Maize | cytosol | 25.51 | 48.54 |
| CDY50459 | Canola | extracellular, plasma membrane | 18.37 | 46.75 |
| CDY50115 | Canola | cytosol | 20.92 | 44.57 |
| CDY65682 | Canola | cytosol | 18.88 | 41.11 |
| CDY24443 | Canola | cytosol | 41.33 | 30.57 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:A0A078E9Q6 | EnsemblPlants:CDX96093 | ProteinID:CDX96093 | ProteinID:CDX96093.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00102139001 | InterPro:IPR036394 | HAMAP:MF_01331_A |
| PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS |
| InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | SignalP:SignalP-noTM | TIGRFAMs:TIGR01038 | UniParc:UPI0004EEF351 |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g26380D
Coordinates
chrLK031892:-:984666..986183
Molecular Weight (calculated)
22221.9 Da
IEP (calculated)
10.596
GRAVY (calculated)
-0.559
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFCTYIVSS QLFLYLLLAA AMVKYSQEPD NQTKSCKARG SDLRVHFKNT RETAHAIRKL PLLKAKRYLE DVIAHKQAIP FTRFCRGVGR TAQAKNRHSN
101: GQGRWPAKSA QFVLDLLKNA ESNAEVKGLD VDALFISHIQ VNQAAKQRRR TYRAHGRINP YMSNPCHIEL ILSEKEESVK KEPETQLAAK SKKSTA
101: GQGRWPAKSA QFVLDLLKNA ESNAEVKGLD VDALFISHIQ VNQAAKQRRR TYRAHGRINP YMSNPCHIEL ILSEKEESVK KEPETQLAAK SKKSTA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.