Factsheet for GSMUA_Achr5P14560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90537	Sorghum	nucleus	70.64	90.06
EER90536	Sorghum	nucleus	70.18	89.47
GSMUA_Achr4P16010_001	Banana	nucleus	77.52	89.42
EES19208	Sorghum	cytosol	69.72	88.89
Os09t0258600-01	Rice	nucleus	69.72	88.89
KRH31467	Soybean	nucleus	72.94	87.85
KRH58763	Soybean	nucleus	72.94	87.85
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	68.81	87.72
Solyc03g111230.2.1	Tomato	nucleus, unclear	54.13	87.41
PGSC0003DMT400039421	Potato	nucleus	68.35	86.13
Os08t0530200-01	Rice	nucleus	67.43	85.96
Zm00001d049815_P002	Maize	cytosol	67.43	85.96
TraesCS5A01G170300.1	Wheat	cytosol	66.97	85.88
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	66.97	85.88
TraesCS5D01G174700.1	Wheat	cytosol	66.97	85.88
Solyc06g071880.2.1	Tomato	cytosol	53.67	85.4
Zm00001d031611_P001	Maize	cytosol	66.97	85.38
AT1G27400.1	Thale cress	cytosol	68.81	85.23
Bra032828.1-P	Field mustard	cytosol	68.35	84.66
Solyc06g071870.2.1	Tomato	nucleus	67.89	84.57
KRH42661	Soybean	nucleus	72.94	84.13
Bra033999.1-P	Field mustard	nucleus	67.43	84.0
PGSC0003DMT400069384	Potato	nucleus	67.43	84.0
KRG97436	Soybean	nucleus	69.72	83.98
AT1G67430.1	Thale cress	nucleus	66.97	83.43
KRH08728	Soybean	cytosol, nucleus	64.22	83.33
TraesCS7D01G260500.1	Wheat	cytosol	65.6	83.14
TraesCS7B01G157300.1	Wheat	golgi, unclear	65.6	83.14
TraesCS7A01G259500.1	Wheat	cytosol	65.14	82.56
Bra004225.1-P	Field mustard	nucleus	66.06	82.29
CDY27616	Canola	cytosol	67.89	80.0
CDY11812	Canola	cytosol, nucleus, plastid	68.35	78.01
CDX90084	Canola	endoplasmic reticulum	68.81	77.72
CDY03920	Canola	extracellular, mitochondrion	67.89	75.9
CDY56187	Canola	mitochondrion	69.27	75.88
CDX96093	Canola	endoplasmic reticulum, extracellular	67.89	75.51
VIT_01s0010g03370.t01	Wine grape	plastid	70.64	75.49
HORVU5Hr1G052280.2	Barley	plastid	66.97	74.87
GSMUA_Achr5P18680_001	Banana	cytosol	79.82	74.68
VIT_17s0000g01520.t01	Wine grape	cytosol	71.1	74.16
CDY01809	Canola	extracellular	68.35	73.4
CDY07422	Canola	mitochondrion	67.89	73.27
CDY12646	Canola	cytosol, plastid	67.43	73.13
Bra010943.1-P	Field mustard	cytosol	67.89	72.91
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	70.64	71.63
HORVU7Hr1G054010.2	Barley	mitochondrion	65.6	71.5
CDY15709	Canola	extracellular	69.27	71.23
CDY51350	Canola	cytosol, plastid	67.43	69.01
GSMUA_Achr11P...	Banana	mitochondrion	74.77	66.53
Zm00001d010009_P003	Maize	cytosol	64.22	65.73
OQU80827	Sorghum	cytosol	55.96	65.24
VIT_18s0001g05140.t01	Wine grape	cytosol	36.7	65.04
CDY28886	Canola	extracellular	67.89	62.98
Zm00001d033767_P002	Maize	nucleus	55.5	60.8
Zm00001d003788_P001	Maize	cytosol	24.31	60.23
Zm00001d011848_P001	Maize	nucleus	23.39	59.3
Zm00001d038017_P001	Maize	nucleus	16.51	59.02
Zm00001d049547_P001	Maize	cytosol	26.15	55.34

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr5G14560_001	EnsemblPlants:GSMUA_Achr5P14560_001	EnsemblPlants:GSMUA_Achr5T14560_001	InterPro:IPR036394	UniProt:M0SYI5	HAMAP:MF_01331_A
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF18	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI0002967AE6	SEG:seg

Description

60S ribosomal protein L17-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14560_001]

Coordinates

chr5:+:10506426..10510947

Molecular Weight (calculated)

24012.9 Da

IEP (calculated)

10.522

GRAVY (calculated)

-0.652

Length

218 amino acids

Sequence
(BLAST)

001: MKESDATCDC SLKLSIIGGE RTVGGDLEGV CLRAAMVKYS REPANPTKSA KAMGQDLRVH FKNTRETAHA LRKLPLSKAK RYLEDVIAHK QAIPFRRFCG
101: GVGRTAQAKG RHPNGQGRWP AKSAGFILDL LKNAESNAEV KGLDVDALYI SHIQVNQAPK QRRRTYRAHG RINPYMSSPC HIELILSEKE ESVKKEPETQ
201: IAPSKPKKGQ ALRSGASS

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.