Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08728 | Soybean | cytosol, nucleus | 69.92 | 51.19 |
| PGSC0003DMT400039421 | Potato | nucleus | 69.92 | 49.71 |
| PGSC0003DMT400069384 | Potato | nucleus | 69.92 | 49.14 |
| Solyc06g071870.2.1 | Tomato | nucleus | 69.11 | 48.57 |
| KRH58763 | Soybean | nucleus | 70.73 | 48.07 |
| EES19208 | Sorghum | cytosol | 66.67 | 47.95 |
| KRG97436 | Soybean | nucleus | 69.92 | 47.51 |
| AT1G67430.1 | Thale cress | nucleus | 67.48 | 47.43 |
| Bra033999.1-P | Field mustard | nucleus | 67.48 | 47.43 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 65.85 | 47.37 |
| Bra032828.1-P | Field mustard | cytosol | 67.48 | 47.16 |
| Zm00001d049815_P002 | Maize | cytosol | 65.04 | 46.78 |
| Zm00001d031611_P001 | Maize | cytosol | 65.04 | 46.78 |
| EER90537 | Sorghum | nucleus | 65.04 | 46.78 |
| EER90536 | Sorghum | nucleus | 65.04 | 46.78 |
| AT1G27400.1 | Thale cress | cytosol | 66.67 | 46.59 |
| KRH31467 | Soybean | nucleus | 68.29 | 46.41 |
| Os09t0258600-01 | Rice | nucleus | 64.23 | 46.2 |
| KRH42661 | Soybean | nucleus | 70.73 | 46.03 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 75.61 | 45.59 |
| Bra004225.1-P | Field mustard | nucleus | 64.23 | 45.14 |
| Solyc06g071880.2.1 | Tomato | cytosol | 49.59 | 44.53 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 48.78 | 44.44 |
| CDY27616 | Canola | cytosol | 66.67 | 44.32 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 61.79 | 44.19 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 61.79 | 44.19 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 60.98 | 44.12 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 60.98 | 44.12 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 60.98 | 44.12 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 60.98 | 43.6 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 73.98 | 43.54 |
| Os08t0530200-01 | Rice | nucleus | 60.16 | 43.27 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 66.67 | 42.93 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 74.8 | 42.79 |
| CDX90084 | Canola | endoplasmic reticulum | 66.67 | 42.49 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 67.48 | 42.35 |
| CDY56187 | Canola | mitochondrion | 67.48 | 41.71 |
| CDY03920 | Canola | extracellular, mitochondrion | 65.85 | 41.54 |
| CDY12646 | Canola | cytosol, plastid | 67.48 | 41.29 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 63.41 | 41.27 |
| CDY07422 | Canola | mitochondrion | 67.48 | 41.09 |
| CDY01809 | Canola | extracellular | 67.48 | 40.89 |
| Bra010943.1-P | Field mustard | cytosol | 66.67 | 40.39 |
| CDY51350 | Canola | cytosol, plastid | 67.48 | 38.97 |
| CDY15709 | Canola | extracellular | 66.67 | 38.68 |
| HORVU5Hr1G052280.2 | Barley | plastid | 60.16 | 37.95 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 60.98 | 37.5 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 65.04 | 36.7 |
| CDY28886 | Canola | extracellular | 67.48 | 35.32 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 64.23 | 33.91 |
| OQU80827 | Sorghum | cytosol | 51.22 | 33.69 |
| Zm00001d010009_P003 | Maize | cytosol | 57.72 | 33.33 |
| Zm00001d033767_P002 | Maize | nucleus | 53.66 | 33.17 |
| GSMUA_Achr11P... | Banana | mitochondrion | 63.41 | 31.84 |
| Zm00001d049547_P001 | Maize | cytosol | 19.51 | 23.3 |
| Zm00001d003788_P001 | Maize | cytosol | 15.45 | 21.59 |
| Zm00001d011848_P001 | Maize | nucleus | 14.63 | 20.93 |
| Zm00001d038017_P001 | Maize | nucleus | 7.32 | 14.75 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | ProteinID:CCB56068 | ProteinID:CCB56068.1 | UniProt:F6HN13 | EMBL:FN595996 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR036394 | PFAM:PF00237 |
| PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 |
| TIGRFAMs:TIGR01038 | UniParc:UPI0002108E2A | ArrayExpress:VIT_18s0001g05140 | EnsemblPlantsGene:VIT_18s0001g05140 | EnsemblPlants:VIT_18s0001g05140.t01 | : |
Description
No Description!
Coordinates
chr18_random:+:4179342..4179743
Molecular Weight (calculated)
13949.5 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.655
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSRESDN PTKFCKTRDS DFRVHFKNTR ETTDATSRLL LTMAREYLED APVHEQAMPF TRFCRGVGRT AQAKNRHSNG QGCSSVKSVK YILVLLKHAE
101: SNADLKGLDV NSPYISHIQV TQA
101: SNADLKGLDV NSPYISHIQV TQA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.