Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038017_P001 | Maize | nucleus | 64.77 | 93.44 |
| Zm00001d011848_P001 | Maize | nucleus | 90.91 | 93.02 |
| Zm00001d049547_P001 | Maize | cytosol | 93.18 | 79.61 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 55.68 | 36.3 |
| Solyc06g071880.2.1 | Tomato | cytosol | 53.41 | 34.31 |
| Zm00001d049815_P002 | Maize | cytosol | 63.64 | 32.75 |
| Zm00001d031611_P001 | Maize | cytosol | 63.64 | 32.75 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 61.36 | 31.58 |
| Os08t0530200-01 | Rice | nucleus | 60.23 | 30.99 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 60.23 | 30.81 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 60.23 | 30.81 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 60.23 | 30.81 |
| KRH58763 | Soybean | nucleus | 61.36 | 29.83 |
| KRH31467 | Soybean | nucleus | 60.23 | 29.28 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 62.5 | 29.1 |
| KRH42661 | Soybean | nucleus | 61.36 | 28.57 |
| PGSC0003DMT400039421 | Potato | nucleus | 55.68 | 28.32 |
| KRG97436 | Soybean | nucleus | 57.95 | 28.18 |
| KRH08728 | Soybean | cytosol, nucleus | 53.41 | 27.98 |
| Bra032828.1-P | Field mustard | cytosol | 54.55 | 27.27 |
| OQU80827 | Sorghum | cytosol | 57.95 | 27.27 |
| AT1G27400.1 | Thale cress | cytosol | 54.55 | 27.27 |
| Solyc06g071870.2.1 | Tomato | nucleus | 53.41 | 26.86 |
| PGSC0003DMT400069384 | Potato | nucleus | 53.41 | 26.86 |
| AT1G67430.1 | Thale cress | nucleus | 53.41 | 26.86 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 60.23 | 26.5 |
| Bra033999.1-P | Field mustard | nucleus | 52.27 | 26.29 |
| CDY27616 | Canola | cytosol | 54.55 | 25.95 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 59.09 | 25.49 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 60.23 | 25.36 |
| Zm00001d010009_P003 | Maize | cytosol | 61.36 | 25.35 |
| CDX90084 | Canola | endoplasmic reticulum | 54.55 | 24.87 |
| CDY03920 | Canola | extracellular, mitochondrion | 54.55 | 24.62 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 53.41 | 24.61 |
| Bra004225.1-P | Field mustard | nucleus | 48.86 | 24.57 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 60.23 | 24.31 |
| CDY56187 | Canola | mitochondrion | 54.55 | 24.12 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 57.95 | 23.72 |
| Bra010943.1-P | Field mustard | cytosol | 54.55 | 23.65 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 52.27 | 23.47 |
| CDY12646 | Canola | cytosol, plastid | 52.27 | 22.89 |
| CDY07422 | Canola | mitochondrion | 52.27 | 22.77 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 60.23 | 22.75 |
| CDY01809 | Canola | extracellular | 52.27 | 22.66 |
| CDY15709 | Canola | extracellular | 54.55 | 22.64 |
| CDY51350 | Canola | cytosol, plastid | 52.27 | 21.6 |
| GSMUA_Achr11P... | Banana | mitochondrion | 56.82 | 20.41 |
| CDY28886 | Canola | extracellular | 52.27 | 19.57 |
| Zm00001d033767_P002 | Maize | nucleus | 42.05 | 18.59 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 21.59 | 15.45 |
Protein Annotations
| Gene3D:3.90.470.10 | MapMan:35.2 | UniProt:A0A1R3NA70 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 |
| InterPro:IPR036394 | ProteinID:ONM17714.1 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf |
| SUPFAM:SSF54843 | UniParc:UPI00097CDB3D | EnsemblPlantsGene:Zm00001d003788 | EnsemblPlants:Zm00001d003788_P001 | EnsemblPlants:Zm00001d003788_T001 | : |
Description
60S ribosomal protein L17-2
Coordinates
chr2:+:59382251..59383364
Molecular Weight (calculated)
10550.0 Da
IEP (calculated)
10.598
GRAVY (calculated)
-0.740
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKAKRYLED IIAHRQSIVF RRYCVKDLVV DNLYVSLIQV NLAQKQHKRI DTYMSSPCHS ELFLLEKEDP MKKEVRKRAK RSESRRGR
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.