Factsheet for GSMUA_Achr11P22750_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90537	Sorghum	nucleus	62.86	90.06
EER90536	Sorghum	nucleus	62.45	89.47
Os09t0258600-01	Rice	nucleus	62.04	88.89
EES19208	Sorghum	cytosol	60.82	87.13
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	60.41	86.55
Os08t0530200-01	Rice	nucleus	60.0	85.96
Zm00001d049815_P002	Maize	cytosol	59.18	84.8
AT1G67430.1	Thale cress	nucleus	60.41	84.57
Solyc03g111230.2.1	Tomato	nucleus, unclear	46.53	84.44
Zm00001d031611_P001	Maize	cytosol	58.78	84.21
GSMUA_Achr4P16010_001	Banana	nucleus	64.9	84.13
Bra033999.1-P	Field mustard	nucleus	60.0	84.0
TraesCS5A01G170300.1	Wheat	cytosol	57.96	83.53
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	57.96	83.53
TraesCS5D01G174700.1	Wheat	cytosol	57.96	83.53
AT1G27400.1	Thale cress	cytosol	60.0	83.52
PGSC0003DMT400039421	Potato	nucleus	58.78	83.24
Bra032828.1-P	Field mustard	cytosol	59.59	82.95
KRG97436	Soybean	nucleus	61.22	82.87
KRH58763	Soybean	nucleus	60.82	82.32
KRH31467	Soybean	nucleus	60.82	82.32
KRH08728	Soybean	cytosol, nucleus	56.33	82.14
TraesCS7B01G157300.1	Wheat	golgi, unclear	57.55	81.98
TraesCS7D01G260500.1	Wheat	cytosol	57.55	81.98
Bra004225.1-P	Field mustard	nucleus	58.37	81.71
TraesCS7A01G259500.1	Wheat	cytosol	57.14	81.4
Solyc06g071880.2.1	Tomato	cytosol	44.9	80.29
Solyc06g071870.2.1	Tomato	nucleus	57.14	80.0
PGSC0003DMT400069384	Potato	nucleus	56.73	79.43
CDY27616	Canola	cytosol	59.18	78.38
KRH42661	Soybean	nucleus	60.41	78.31
CDY11812	Canola	cytosol, nucleus, plastid	60.82	78.01
CDX90084	Canola	endoplasmic reticulum	60.41	76.68
CDX96093	Canola	endoplasmic reticulum, extracellular	60.41	75.51
CDY56187	Canola	mitochondrion	60.82	74.87
CDY03920	Canola	extracellular, mitochondrion	59.59	74.87
GSMUA_Achr5P14560_001	Banana	cytosol	66.53	74.77
CDY12646	Canola	cytosol, plastid	60.82	74.13
HORVU5Hr1G052280.2	Barley	plastid	58.78	73.85
GSMUA_Achr5P18680_001	Banana	cytosol	70.2	73.82
CDY07422	Canola	mitochondrion	60.82	73.76
CDY01809	Canola	extracellular	60.41	72.91
VIT_01s0010g03370.t01	Wine grape	plastid	60.0	72.06
Bra010943.1-P	Field mustard	cytosol	59.59	71.92
HORVU7Hr1G054010.2	Barley	mitochondrion	57.55	70.5
VIT_17s0000g01520.t01	Wine grape	cytosol	60.0	70.33
CDY15709	Canola	extracellular	60.82	70.28
CDY51350	Canola	cytosol, plastid	60.82	69.95
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	60.0	68.37
OQU80827	Sorghum	cytosol	50.2	65.78
CDY28886	Canola	extracellular	62.45	65.11
Zm00001d010009_P003	Maize	cytosol	56.33	64.79
VIT_18s0001g05140.t01	Wine grape	cytosol	31.84	63.41
Zm00001d033767_P002	Maize	nucleus	48.16	59.3
Zm00001d003788_P001	Maize	cytosol	20.41	56.82
Zm00001d011848_P001	Maize	nucleus	19.59	55.81
Zm00001d038017_P001	Maize	nucleus	13.88	55.74
Zm00001d049547_P001	Maize	cytosol	21.63	51.46

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr11G22750_001	EnsemblPlants:GSMUA_Achr11P22750_001	EnsemblPlants:GSMUA_Achr11T22750_001	InterPro:IPR036394	UniProt:M0RUK5	HAMAP:MF_01331_A
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF18	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI0002959673	SEG:seg

Description

60S ribosomal protein L17-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G22750_001]

Coordinates

chr11:+:22925721..22929794

Molecular Weight (calculated)

27221.0 Da

IEP (calculated)

11.092

GRAVY (calculated)

-0.700

Length

245 amino acids

Sequence
(BLAST)

001: MLRITRSPTS LVGGNKAGAA WDPLFPEKSL RSNKKSGIPV GMESSRLVFK PASPSGCQRV GIGDREESFE AMVKYSREPS NPTKSAKAMG HDLRVHFKNT
101: RETAHAIRKL PLSKAKRYLE DVIAHKQAIP FRRFCGGVGR TAQAKGRHPN GQGRWPAKSA RFILDLLKGA KSNAEVKGLD VDALFISHIQ VNQAPKQRRR
201: TYRAHGRINP YMSSPCHIEL ILSEKEEPVK KEPETQIAPS KPKKA

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.