Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90084 | Canola | endoplasmic reticulum | 94.24 | 93.26 |
| CDY27616 | Canola | cytosol | 90.05 | 92.97 |
| CDY56187 | Canola | mitochondrion | 92.15 | 88.44 |
| CDY03920 | Canola | extracellular, mitochondrion | 89.01 | 87.18 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 88.48 | 86.22 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 60.73 | 85.93 |
| Bra010943.1-P | Field mustard | cytosol | 91.1 | 85.71 |
| PGSC0003DMT400039421 | Potato | nucleus | 77.49 | 85.55 |
| Solyc06g071880.2.1 | Tomato | cytosol | 61.26 | 85.4 |
| Solyc06g071870.2.1 | Tomato | nucleus | 78.01 | 85.14 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 75.39 | 84.71 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 75.39 | 84.71 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 75.39 | 84.71 |
| PGSC0003DMT400069384 | Potato | nucleus | 77.49 | 84.57 |
| Os09t0258600-01 | Rice | nucleus | 75.39 | 84.21 |
| CDY07422 | Canola | mitochondrion | 89.01 | 84.16 |
| CDY12646 | Canola | cytosol, plastid | 88.48 | 84.08 |
| CDY15709 | Canola | extracellular | 93.19 | 83.96 |
| EER90536 | Sorghum | nucleus | 74.35 | 83.04 |
| CDY01809 | Canola | extracellular | 87.96 | 82.76 |
| Zm00001d049815_P002 | Maize | cytosol | 73.82 | 82.46 |
| EER90537 | Sorghum | nucleus | 73.82 | 82.46 |
| Zm00001d031611_P001 | Maize | cytosol | 73.3 | 81.87 |
| EES19208 | Sorghum | cytosol | 73.3 | 81.87 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 73.3 | 81.4 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 73.3 | 81.4 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 72.77 | 81.29 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 72.77 | 80.81 |
| Os08t0530200-01 | Rice | nucleus | 72.25 | 80.7 |
| CDY51350 | Canola | cytosol, plastid | 88.48 | 79.34 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 76.96 | 77.78 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 81.68 | 76.47 |
| HORVU5Hr1G052280.2 | Barley | plastid | 75.92 | 74.36 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 79.58 | 72.73 |
| CDY28886 | Canola | extracellular | 89.01 | 72.34 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 80.63 | 71.63 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 72.77 | 69.5 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 78.01 | 68.35 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 42.93 | 66.67 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 79.58 | 65.24 |
| Zm00001d010009_P003 | Maize | cytosol | 68.06 | 61.03 |
| OQU80827 | Sorghum | cytosol | 59.69 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 78.01 | 60.82 |
| CDX91455 | Canola | cytosol | 18.85 | 55.38 |
| Zm00001d033767_P002 | Maize | nucleus | 57.59 | 55.28 |
| Zm00001d003788_P001 | Maize | cytosol | 24.61 | 53.41 |
| Zm00001d038017_P001 | Maize | nucleus | 16.75 | 52.46 |
| Zm00001d011848_P001 | Maize | nucleus | 23.56 | 52.33 |
| Zm00001d049547_P001 | Maize | cytosol | 26.7 | 49.51 |
| CDY50459 | Canola | extracellular, plasma membrane | 18.32 | 45.45 |
| CDY50115 | Canola | cytosol | 21.47 | 44.57 |
| CDY65682 | Canola | cytosol | 18.85 | 40.0 |
| CDY24443 | Canola | cytosol | 42.93 | 30.94 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:A0A078FFP1 | UniProt:A0A078FFP1 | EnsemblPlants:CDY11812 | ProteinID:CDY11812 |
| ProteinID:CDY11812.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00050072001 |
| InterPro:IPR036394 | HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 |
| InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 |
| UniParc:UPI0004EDC7FE | SEG:seg | : | : | : | : |
Description
BnaC03g57660DBnaC03g57660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFP1]
Coordinates
chrLK032014:-:798960..800776
Molecular Weight (calculated)
21592.0 Da
IEP (calculated)
10.877
GRAVY (calculated)
-0.715
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPPLLSIRS FSLAAMVKYS QEPDNTTKSC KARGADLRVH FKNTRETAHA IRKLPLNKAK RYLEDVIAHK QAIPFTRFCR GVGRTAQAKN RHSNGQGRWP
101: AKSAQFVLDL LKNAESNAEV KGLDVDALFI SHIQVNQAAK RRRRTYRAHG RINPYMSNPC HIELILSEKE EPVKKEPETQ LAAKSKKGTS S
101: AKSAQFVLDL LKNAESNAEV KGLDVDALFI SHIQVNQAAK RRRRTYRAHG RINPYMSNPC HIELILSEKE EPVKKEPETQ LAAKSKKGTS S
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.