Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
26371478
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g071880.2.1 | Tomato | cytosol | 78.29 | 100.0 |
| PGSC0003DMT400069384 | Potato | nucleus | 99.43 | 99.43 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 72.57 | 94.07 |
| AT1G27400.1 | Thale cress | cytosol | 86.29 | 85.8 |
| Bra033999.1-P | Field mustard | nucleus | 85.71 | 85.71 |
| Bra032828.1-P | Field mustard | cytosol | 85.71 | 85.23 |
| AT1G67430.1 | Thale cress | nucleus | 85.14 | 85.14 |
| KRH08728 | Soybean | cytosol, nucleus | 81.71 | 85.12 |
| KRH58763 | Soybean | nucleus | 88.0 | 85.08 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 82.29 | 84.21 |
| Bra004225.1-P | Field mustard | nucleus | 84.0 | 84.0 |
| KRH31467 | Soybean | nucleus | 86.86 | 83.98 |
| KRG97436 | Soybean | nucleus | 86.86 | 83.98 |
| EES19208 | Sorghum | cytosol | 81.71 | 83.63 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 81.14 | 83.53 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.14 | 83.53 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 81.14 | 83.53 |
| EER90537 | Sorghum | nucleus | 81.14 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 80.57 | 82.46 |
| Os09t0258600-01 | Rice | nucleus | 80.57 | 82.46 |
| EER90536 | Sorghum | nucleus | 80.57 | 82.46 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 80.57 | 81.98 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 80.57 | 81.98 |
| Zm00001d031611_P001 | Maize | cytosol | 80.0 | 81.87 |
| KRH42661 | Soybean | nucleus | 88.0 | 81.48 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 80.0 | 81.4 |
| CDY27616 | Canola | cytosol | 85.14 | 80.54 |
| Os08t0530200-01 | Rice | nucleus | 78.29 | 80.12 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 85.14 | 78.01 |
| CDX90084 | Canola | endoplasmic reticulum | 85.71 | 77.72 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 85.71 | 76.53 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 82.29 | 76.19 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 88.57 | 75.98 |
| CDY03920 | Canola | extracellular, mitochondrion | 84.57 | 75.9 |
| CDY56187 | Canola | mitochondrion | 85.71 | 75.38 |
| CDY07422 | Canola | mitochondrion | 86.29 | 74.75 |
| CDY12646 | Canola | cytosol, plastid | 85.71 | 74.63 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 88.57 | 74.16 |
| CDY01809 | Canola | extracellular | 85.71 | 73.89 |
| Bra010943.1-P | Field mustard | cytosol | 85.14 | 73.4 |
| HORVU5Hr1G052280.2 | Barley | plastid | 81.14 | 72.82 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 88.57 | 72.09 |
| CDY15709 | Canola | extracellular | 85.71 | 70.75 |
| CDY51350 | Canola | cytosol, plastid | 85.71 | 70.42 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 80.0 | 70.0 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 48.57 | 69.11 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 84.57 | 67.89 |
| CDY28886 | Canola | extracellular | 86.29 | 64.26 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 82.86 | 62.23 |
| Zm00001d010009_P003 | Maize | cytosol | 74.86 | 61.5 |
| OQU80827 | Sorghum | cytosol | 65.71 | 61.5 |
| GSMUA_Achr11P... | Banana | mitochondrion | 80.0 | 57.14 |
| Zm00001d033767_P002 | Maize | nucleus | 63.43 | 55.78 |
| Zm00001d003788_P001 | Maize | cytosol | 26.86 | 53.41 |
| Zm00001d011848_P001 | Maize | nucleus | 25.71 | 52.33 |
| Zm00001d049547_P001 | Maize | cytosol | 29.14 | 49.51 |
| Zm00001d038017_P001 | Maize | nucleus | 17.14 | 49.18 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 |
| InterPro:IPR036394 | UniProt:K4C8Q9 | HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 |
| PANTHER:PTHR11593:SF18 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 |
| EnsemblPlantsGene:Solyc06g071870.2 | EnsemblPlants:Solyc06g071870.2.1 | TIGRFAMs:TIGR01038 | UniParc:UPI000276556F | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:44278611..44281332
Molecular Weight (calculated)
19973.9 Da
IEP (calculated)
10.729
GRAVY (calculated)
-0.935
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSNEPEN PTKSCKARGS DLRAHFKNTR ETAHALRKMP LNKAKSYLED VLAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DSLYITHIQV NQAQKQRRRT YRAHGRINPY MSHPCHIELV LSEKEESVKK EPETQLAPRK TKASS
101: SNAEVKGLDV DSLYITHIQV NQAQKQRRRT YRAHGRINPY MSHPCHIELV LSEKEESVKK EPETQLAPRK TKASS
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.