Factsheet for Zm00001d037732_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031611_P001	Maize	cytosol	92.4	92.4
Os09t0258600-01	Rice	nucleus	92.4	92.4
Zm00001d049815_P002	Maize	cytosol	91.81	91.81
TraesCS5D01G174700.1	Wheat	cytosol	87.72	88.24
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	87.72	88.24
TraesCS5A01G170300.1	Wheat	cytosol	87.13	87.65
KRH31467	Soybean	nucleus	88.89	83.98
KRG97436	Soybean	nucleus	88.89	83.98
KRH08728	Soybean	cytosol, nucleus	82.46	83.93
Solyc03g111230.2.1	Tomato	nucleus, unclear	66.08	83.7
Solyc06g071880.2.1	Tomato	cytosol	66.67	83.21
KRH58763	Soybean	nucleus	87.13	82.32
Solyc06g071870.2.1	Tomato	nucleus	84.21	82.29
PGSC0003DMT400039421	Potato	nucleus	83.04	82.08
PGSC0003DMT400069384	Potato	nucleus	83.63	81.71
AT1G67430.1	Thale cress	nucleus	81.87	80.0
AT1G27400.1	Thale cress	cytosol	81.87	79.55
Bra033999.1-P	Field mustard	nucleus	81.29	79.43
Bra032828.1-P	Field mustard	cytosol	81.29	78.98
GSMUA_Achr4P16010_001	Banana	nucleus	86.55	78.31
KRH42661	Soybean	nucleus	86.55	78.31
Bra004225.1-P	Field mustard	nucleus	78.95	77.14
HORVU5Hr1G052280.2	Barley	plastid	86.55	75.9
CDY27616	Canola	cytosol	80.7	74.59
CDY11812	Canola	cytosol, nucleus, plastid	81.29	72.77
CDX90084	Canola	endoplasmic reticulum	81.87	72.54
Zm00001d010009_P003	Maize	cytosol	90.06	72.3
CDX96093	Canola	endoplasmic reticulum, extracellular	81.29	70.92
CDY03920	Canola	extracellular, mitochondrion	80.7	70.77
VIT_01s0010g03370.t01	Wine grape	plastid	84.21	70.59
VIT_17s0000g01520.t01	Wine grape	cytosol	85.38	69.86
CDY56187	Canola	mitochondrion	81.29	69.85
CDY12646	Canola	cytosol, plastid	81.29	69.15
CDY07422	Canola	mitochondrion	81.29	68.81
GSMUA_Achr5P14560_001	Banana	cytosol	87.72	68.81
CDY01809	Canola	extracellular	81.29	68.47
Bra010943.1-P	Field mustard	cytosol	81.29	68.47
Zm00001d033767_P002	Maize	nucleus	78.36	67.34
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	84.21	66.98
CDY15709	Canola	extracellular	81.87	66.04
VIT_18s0001g05140.t01	Wine grape	cytosol	47.37	65.85
CDY51350	Canola	cytosol, plastid	81.29	65.26
GSMUA_Achr5P18680_001	Banana	cytosol	88.3	64.81
Zm00001d003788_P001	Maize	cytosol	31.58	61.36
Zm00001d011848_P001	Maize	nucleus	30.41	60.47
GSMUA_Achr11P...	Banana	mitochondrion	86.55	60.41
CDY28886	Canola	extracellular	81.29	59.15
Zm00001d049547_P001	Maize	cytosol	35.09	58.25
Zm00001d038017_P001	Maize	nucleus	20.47	57.38

Protein Annotations

EntrezGene:100194089	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	ProteinID:AQK84691.1	ProteinID:AQK84692.1	UniProt:B4FHE4
EMBL:BT036532	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394
HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI00017B6FAA
EnsemblPlantsGene:Zm00001d037732	EnsemblPlants:Zm00001d037732_P002	EnsemblPlants:Zm00001d037732_T002	:	:	:

Description

60S ribosomal protein L17-2

Coordinates

chr6:+:135531705..135534553

Molecular Weight (calculated)

19393.3 Da

IEP (calculated)

10.778

GRAVY (calculated)

-0.760

Length

171 amino acids

Sequence
(BLAST)

001: MVKYSTEPSN PTKSAKAMGR DLRVHFKNTR ETAFALRKLS LTKAKSYLED VIAHKQAIPF RRYCGGVGRT AQAKSRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DTLYVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EAESQIATRK A

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.