Factsheet for PGSC0003DMT400069384

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071870.2.1	Tomato	nucleus	99.43	99.43
Solyc06g071880.2.1	Tomato	cytosol	77.71	99.27
PGSC0003DMT400039421	Potato	nucleus	90.86	91.91
AT1G27400.1	Thale cress	cytosol	85.71	85.23
Bra033999.1-P	Field mustard	nucleus	85.14	85.14
Bra032828.1-P	Field mustard	cytosol	85.14	84.66
AT1G67430.1	Thale cress	nucleus	84.57	84.57
KRH58763	Soybean	nucleus	87.43	84.53
KRH08728	Soybean	cytosol, nucleus	81.14	84.52
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	81.71	83.63
Bra004225.1-P	Field mustard	nucleus	83.43	83.43
KRG97436	Soybean	nucleus	86.29	83.43
KRH31467	Soybean	nucleus	86.29	83.43
EES19208	Sorghum	cytosol	81.14	83.04
TraesCS5A01G170300.1	Wheat	cytosol	80.57	82.94
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	80.57	82.94
TraesCS5D01G174700.1	Wheat	cytosol	80.57	82.94
EER90537	Sorghum	nucleus	80.57	82.46
EER90536	Sorghum	nucleus	80.0	81.87
Os09t0258600-01	Rice	nucleus	80.0	81.87
Zm00001d049815_P002	Maize	cytosol	80.0	81.87
TraesCS7B01G157300.1	Wheat	golgi, unclear	80.0	81.4
TraesCS7D01G260500.1	Wheat	cytosol	80.0	81.4
Zm00001d031611_P001	Maize	cytosol	79.43	81.29
KRH42661	Soybean	nucleus	87.43	80.95
TraesCS7A01G259500.1	Wheat	cytosol	79.43	80.81
CDY27616	Canola	cytosol	84.57	80.0
Os08t0530200-01	Rice	nucleus	77.71	79.53
CDY11812	Canola	cytosol, nucleus, plastid	84.57	77.49
CDX90084	Canola	endoplasmic reticulum	85.14	77.2
CDX96093	Canola	endoplasmic reticulum, extracellular	85.14	76.02
GSMUA_Achr4P16010_001	Banana	nucleus	81.71	75.66
VIT_01s0010g03370.t01	Wine grape	plastid	88.0	75.49
CDY03920	Canola	extracellular, mitochondrion	84.0	75.38
CDY56187	Canola	mitochondrion	85.14	74.87
CDY07422	Canola	mitochondrion	85.71	74.26
CDY12646	Canola	cytosol, plastid	85.14	74.13
VIT_17s0000g01520.t01	Wine grape	cytosol	88.0	73.68
CDY01809	Canola	extracellular	85.14	73.4
Bra010943.1-P	Field mustard	cytosol	84.57	72.91
HORVU5Hr1G052280.2	Barley	plastid	80.57	72.31
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	88.0	71.63
CDY15709	Canola	extracellular	85.14	70.28
CDY51350	Canola	cytosol, plastid	85.14	69.95
VIT_18s0001g05140.t01	Wine grape	cytosol	49.14	69.92
HORVU7Hr1G054010.2	Barley	mitochondrion	79.43	69.5
GSMUA_Achr5P14560_001	Banana	cytosol	84.0	67.43
CDY28886	Canola	extracellular	85.71	63.83
GSMUA_Achr5P18680_001	Banana	cytosol	82.29	61.8
Zm00001d010009_P003	Maize	cytosol	74.29	61.03
OQU80827	Sorghum	cytosol	65.14	60.96
GSMUA_Achr11P...	Banana	mitochondrion	79.43	56.73
Zm00001d033767_P002	Maize	nucleus	62.86	55.28
Zm00001d003788_P001	Maize	cytosol	26.86	53.41
Zm00001d011848_P001	Maize	nucleus	25.71	52.33
Zm00001d049547_P001	Maize	cytosol	29.14	49.51
Zm00001d038017_P001	Maize	nucleus	17.14	49.18

Protein Annotations

EntrezGene:102580390	EntrezGene:102580731	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394	UniProt:M1CKD4	HAMAP:MF_01331_A	PFAM:PF00237
EnsemblPlantsGene:PGSC0003DMG400026983	PGSC:PGSC0003DMG400026983	EnsemblPlants:PGSC0003DMT400069384	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF18
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038
UniParc:UPI000296EF69	RefSeq:XP_006347412.1	SEG:seg	:	:	:

Description

Ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026983]

Coordinates

chr6:-:52672945..52682352

Molecular Weight (calculated)

20002.0 Da

IEP (calculated)

10.729

GRAVY (calculated)

-0.921

Length

175 amino acids

Sequence
(BLAST)

001: MVKYSNEPEN PTKSCKARGS DLRAHFKNTR ETAHALRKMP LNKAKSYLED VLAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPVKSVK FILDLLKNAE
101: SNAEVKGLDV DSLYITHIQV NQAQKQRRRT YRAHGRINPY MSHPCHIELV LSEKEESVKK EPETQLAPRK TKASS

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.