Factsheet for VIT_01s0010g03380.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

nucleus 1
cytosol 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111230.2.1	Tomato	nucleus, unclear	56.74	90.37
PGSC0003DMT400039421	Potato	nucleus	72.56	90.17
KRH58763	Soybean	nucleus	75.81	90.06
KRH31467	Soybean	nucleus	75.35	89.5
Solyc06g071880.2.1	Tomato	cytosol	56.74	89.05
Solyc06g071870.2.1	Tomato	nucleus	72.09	88.57
KRH08728	Soybean	cytosol, nucleus	68.84	88.1
PGSC0003DMT400069384	Potato	nucleus	71.63	88.0
AT1G27400.1	Thale cress	cytosol	71.63	87.5
KRG97436	Soybean	nucleus	73.49	87.29
Bra032828.1-P	Field mustard	cytosol	71.16	86.93
AT1G67430.1	Thale cress	nucleus	70.7	86.86
Bra033999.1-P	Field mustard	nucleus	70.23	86.29
KRH42661	Soybean	nucleus	75.81	86.24
EES19208	Sorghum	cytosol	67.91	85.38
Os09t0258600-01	Rice	nucleus	67.44	84.8
Bra004225.1-P	Field mustard	nucleus	68.84	84.57
CDY27616	Canola	cytosol	72.56	84.32
VIT_01s0010g03370.t01	Wine grape	plastid	80.0	84.31
Zm00001d049815_P002	Maize	cytosol	66.98	84.21
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	66.98	84.21
EER90536	Sorghum	nucleus	66.98	84.21
EER90537	Sorghum	nucleus	66.98	84.21
Zm00001d031611_P001	Maize	cytosol	66.51	83.63
TraesCS5A01G170300.1	Wheat	cytosol	65.12	82.35
TraesCS5D01G174700.1	Wheat	cytosol	65.12	82.35
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	65.12	82.35
CDX90084	Canola	endoplasmic reticulum	73.49	81.87
GSMUA_Achr4P16010_001	Banana	nucleus	71.16	80.95
TraesCS7B01G157300.1	Wheat	golgi, unclear	64.65	80.81
TraesCS7D01G260500.1	Wheat	cytosol	64.65	80.81
Os08t0530200-01	Rice	nucleus	64.19	80.7
CDY11812	Canola	cytosol, nucleus, plastid	71.63	80.63
TraesCS7A01G259500.1	Wheat	cytosol	64.19	80.23
VIT_17s0000g01520.t01	Wine grape	cytosol	77.21	79.43
CDY03920	Canola	extracellular, mitochondrion	71.16	78.46
CDX96093	Canola	endoplasmic reticulum, extracellular	71.16	78.06
CDY56187	Canola	mitochondrion	71.63	77.39
CDY07422	Canola	mitochondrion	70.7	75.25
CDY12646	Canola	cytosol, plastid	70.23	75.12
Bra010943.1-P	Field mustard	cytosol	70.7	74.88
CDY01809	Canola	extracellular	70.7	74.88
VIT_18s0001g05140.t01	Wine grape	cytosol	42.79	74.8
CDY15709	Canola	extracellular	73.02	74.06
HORVU5Hr1G052280.2	Barley	plastid	66.98	73.85
CDY51350	Canola	cytosol, plastid	70.23	70.89
GSMUA_Achr5P14560_001	Banana	cytosol	71.63	70.64
HORVU7Hr1G054010.2	Barley	mitochondrion	65.12	70.0
CDY28886	Canola	extracellular	71.16	65.11
GSMUA_Achr5P18680_001	Banana	cytosol	70.23	64.81
Zm00001d010009_P003	Maize	cytosol	62.79	63.38
OQU80827	Sorghum	cytosol	54.88	63.1
GSMUA_Achr11P...	Banana	mitochondrion	68.37	60.0
Zm00001d011848_P001	Maize	nucleus	23.26	58.14
Zm00001d003788_P001	Maize	cytosol	23.72	57.95
Zm00001d033767_P002	Maize	nucleus	51.63	55.78
Zm00001d038017_P001	Maize	nucleus	15.81	55.74
Zm00001d049547_P001	Maize	cytosol	25.12	52.43

Protein Annotations

EntrezGene:100262608	wikigene:100262608	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	ProteinID:CCB51286	ProteinID:CCB51286.1
UniProt:F6HG93	EMBL:FN595754	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394	EntrezGene:LOC100262608	wikigene:LOC100262608	HAMAP:MF_01331_A
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGR:TC59119	TIGR:TC64700	TIGRFAMs:TIGR01038
TMHMM:TMhelix	UniParc:UPI00015CD14E	ArrayExpress:VIT_01s0010g03380	EnsemblPlantsGene:VIT_01s0010g03380	EnsemblPlants:VIT_01s0010g03380.t01	unigene:Vvi.23543
RefSeq:XP_002279258	RefSeq:XP_002279258.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:20708539..20712389

Molecular Weight (calculated)

24714.1 Da

IEP (calculated)

10.745

GRAVY (calculated)

-0.440

Length

215 amino acids

Sequence
(BLAST)

001: MVSHCGLFSF FFFIFFCFIC LKHLIFYVFF QVKYSREPDN PTKSCKARGS DLRVHFKNTR ETAHAIRKLP LAKAKRYLED VLVHKQAIPF TRFCRGVGRT
101: AQAKNRHSNG QGRWPVKSAK FILDLLKNAE SNADLKGLDV DSLYISHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EPETQLATGK
201: SKKSLRGGAS TRIAI

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.