Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G174700.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 99.41 | 99.41 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 90.59 | 89.53 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 88.24 | 87.72 |
| EES19208 | Sorghum | cytosol | 88.24 | 87.72 |
| HORVU5Hr1G052280.2 | Barley | plastid | 98.82 | 86.15 |
| Os09t0258600-01 | Rice | nucleus | 85.29 | 84.8 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 65.88 | 82.96 |
| AT1G27400.1 | Thale cress | cytosol | 85.29 | 82.39 |
| AT1G67430.1 | Thale cress | nucleus | 84.71 | 82.29 |
| KRH08728 | Soybean | cytosol, nucleus | 81.18 | 82.14 |
| Bra032828.1-P | Field mustard | cytosol | 84.71 | 81.82 |
| Solyc06g071880.2.1 | Tomato | cytosol | 65.88 | 81.75 |
| Bra033999.1-P | Field mustard | nucleus | 84.12 | 81.71 |
| PGSC0003DMT400039421 | Potato | nucleus | 82.94 | 81.5 |
| KRG97436 | Soybean | nucleus | 86.47 | 81.22 |
| Solyc06g071870.2.1 | Tomato | nucleus | 83.53 | 81.14 |
| KRH58763 | Soybean | nucleus | 85.88 | 80.66 |
| PGSC0003DMT400069384 | Potato | nucleus | 82.94 | 80.57 |
| KRH31467 | Soybean | nucleus | 85.29 | 80.11 |
| Bra004225.1-P | Field mustard | nucleus | 81.76 | 79.43 |
| CDY27616 | Canola | cytosol | 84.12 | 77.3 |
| KRH42661 | Soybean | nucleus | 85.29 | 76.72 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 84.71 | 76.19 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 84.71 | 75.39 |
| CDX90084 | Canola | endoplasmic reticulum | 85.29 | 75.13 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 84.12 | 72.96 |
| CDY03920 | Canola | extracellular, mitochondrion | 83.53 | 72.82 |
| CDY56187 | Canola | mitochondrion | 84.71 | 72.36 |
| CDY12646 | Canola | cytosol, plastid | 84.12 | 71.14 |
| Bra010943.1-P | Field mustard | cytosol | 84.71 | 70.94 |
| CDY07422 | Canola | mitochondrion | 84.12 | 70.79 |
| CDY01809 | Canola | extracellular | 84.12 | 70.44 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 82.35 | 68.63 |
| CDY15709 | Canola | extracellular | 84.71 | 67.92 |
| CDY51350 | Canola | cytosol, plastid | 84.12 | 67.14 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 85.88 | 66.97 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 81.76 | 66.51 |
| Zm00001d010009_P003 | Maize | cytosol | 82.35 | 65.73 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 82.35 | 65.12 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 84.71 | 61.8 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 44.12 | 60.98 |
| CDY28886 | Canola | extracellular | 84.12 | 60.85 |
| Zm00001d033767_P002 | Maize | nucleus | 68.24 | 58.29 |
| GSMUA_Achr11P... | Banana | mitochondrion | 83.53 | 57.96 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR036394 |
| HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF18 | InterPro:Ribosomal_L22 |
| InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | EnsemblPlantsGene:TraesCS5B01G167100 |
| EnsemblPlants:TraesCS5B01G167100.1 | TIGR:cd00336 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:309383181..309385688
Molecular Weight (calculated)
19486.5 Da
IEP (calculated)
10.930
GRAVY (calculated)
-0.846
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSTDPAN PTKSAKAMGR DLRVHFKNTR ETAFALRKMS LNKAKRYLED VLAHKQAIPF RRYCRGVGRT AQVKNRQPNG QGRWPAKSAK FVLDLLKNAE
101: SNAEVKGLDV DALYISHIQV NQAQKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EAESQIARKA
101: SNAEVKGLDV DALYISHIQV NQAQKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EAESQIARKA
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.