Factsheet for Os09t0258600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19208	Sorghum	cytosol	93.57	93.57
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	92.4	92.4
Os08t0530200-01	Rice	nucleus	88.3	88.3
TraesCS5D01G174700.1	Wheat	cytosol	84.8	85.29
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	84.8	85.29
Solyc03g111230.2.1	Tomato	nucleus, unclear	67.25	85.19
TraesCS5A01G170300.1	Wheat	cytosol	84.21	84.71
KRH08728	Soybean	cytosol, nucleus	82.46	83.93
KRH31467	Soybean	nucleus	88.3	83.43
KRG97436	Soybean	nucleus	88.3	83.43
KRH58763	Soybean	nucleus	87.72	82.87
AT1G67430.1	Thale cress	nucleus	84.8	82.86
PGSC0003DMT400039421	Potato	nucleus	83.63	82.66
Solyc06g071880.2.1	Tomato	cytosol	66.08	82.48
AT1G27400.1	Thale cress	cytosol	84.8	82.39
Bra033999.1-P	Field mustard	nucleus	84.21	82.29
Bra032828.1-P	Field mustard	cytosol	84.21	81.82
GSMUA_Achr4P16010_001	Banana	nucleus	90.06	81.48
Solyc06g071870.2.1	Tomato	nucleus	82.46	80.57
Bra004225.1-P	Field mustard	nucleus	81.87	80.0
PGSC0003DMT400069384	Potato	nucleus	81.87	80.0
KRH42661	Soybean	nucleus	87.13	78.84
CDY27616	Canola	cytosol	83.63	77.3
CDY11812	Canola	cytosol, nucleus, plastid	84.21	75.39
CDX90084	Canola	endoplasmic reticulum	84.8	75.13
HORVU5Hr1G052280.2	Barley	plastid	84.8	74.36
CDX96093	Canola	endoplasmic reticulum, extracellular	84.21	73.47
CDY03920	Canola	extracellular, mitochondrion	83.63	73.33
CDY56187	Canola	mitochondrion	84.21	72.36
CDY12646	Canola	cytosol, plastid	84.21	71.64
CDY07422	Canola	mitochondrion	84.21	71.29
VIT_01s0010g03370.t01	Wine grape	plastid	84.8	71.08
Bra010943.1-P	Field mustard	cytosol	84.21	70.94
CDY01809	Canola	extracellular	84.21	70.94
Zm00001d010009_P003	Maize	cytosol	87.72	70.42
VIT_17s0000g01520.t01	Wine grape	cytosol	85.38	69.86
GSMUA_Achr5P14560_001	Banana	cytosol	88.89	69.72
CDY15709	Canola	extracellular	84.8	68.4
CDY51350	Canola	cytosol, plastid	84.21	67.61
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	84.8	67.44
GSMUA_Achr5P18680_001	Banana	cytosol	90.06	66.09
VIT_18s0001g05140.t01	Wine grape	cytosol	46.2	64.23
Zm00001d033767_P002	Maize	nucleus	72.51	62.31
GSMUA_Achr11P...	Banana	mitochondrion	88.89	62.04
CDY28886	Canola	extracellular	84.21	61.28

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EntrezGene:4346540	EMBL:AK072488	EMBL:AK105087	EMBL:AK120273
ProteinID:BAD23438.1	ProteinID:BAD23752.1	ProteinID:BAF24615.1	ProteinID:BAT07094.1	ProteinID:EAZ43948.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	InterPro:IPR036394	HAMAP:MF_01331_A	EnsemblPlantsGene:Os09g0258600	EnsemblPlants:Os09t0258600-01
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	UniProt:Q6K1W6	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI00003B064F
RefSeq:XP_015612256.1	SEG:seg	:	:	:	:

Description

Similar to 60S ribosomal protein L17-1. (Os09t0258600-01)

Coordinates

chr9:-:4390916..4393872

Molecular Weight (calculated)

19496.5 Da

IEP (calculated)

10.976

GRAVY (calculated)

-0.836

Length

171 amino acids

Sequence
(BLAST)

001: MVKYSREANN PTKSSKAMGR DLRVHFKNTR ETAFAIRKLP LGKAKRYLED VIAHKQAIPF RRYCGGVGRT AQAKSRHSNG QGRWPAKSAR FILDLLKNAE
101: SNAEVKGLDV DTLYVSHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EPESQIAARK A

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.