Factsheet for Zm00001d010009_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	72.3	90.06
EES19208	Sorghum	cytosol	72.3	90.06
Os09t0258600-01	Rice	nucleus	70.42	87.72
Zm00001d031611_P001	Maize	cytosol	69.48	86.55
Zm00001d049815_P002	Maize	cytosol	69.01	85.96
Solyc03g111230.2.1	Tomato	nucleus, unclear	53.05	83.7
TraesCS5D01G174700.1	Wheat	cytosol	65.73	82.35
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	65.73	82.35
TraesCS5A01G170300.1	Wheat	cytosol	65.26	81.76
Solyc06g071880.2.1	Tomato	cytosol	52.11	81.02
KRH08728	Soybean	cytosol, nucleus	61.5	77.98
KRH31467	Soybean	nucleus	66.2	77.9
KRG97436	Soybean	nucleus	66.2	77.9
PGSC0003DMT400039421	Potato	nucleus	61.97	76.3
KRH58763	Soybean	nucleus	64.79	76.24
AT1G67430.1	Thale cress	nucleus	61.5	74.86
Solyc06g071870.2.1	Tomato	nucleus	61.5	74.86
AT1G27400.1	Thale cress	cytosol	61.5	74.43
PGSC0003DMT400069384	Potato	nucleus	61.03	74.29
Bra033999.1-P	Field mustard	nucleus	61.03	74.29
Bra032828.1-P	Field mustard	cytosol	61.03	73.86
GSMUA_Achr4P16010_001	Banana	nucleus	65.26	73.55
KRH42661	Soybean	nucleus	64.32	72.49
Bra004225.1-P	Field mustard	nucleus	59.15	72.0
HORVU5Hr1G052280.2	Barley	plastid	65.26	71.28
CDY27616	Canola	cytosol	61.03	70.27
CDX90084	Canola	endoplasmic reticulum	62.44	68.91
CDY11812	Canola	cytosol, nucleus, plastid	61.03	68.06
CDY03920	Canola	extracellular, mitochondrion	61.03	66.67
CDX96093	Canola	endoplasmic reticulum, extracellular	61.03	66.33
CDY56187	Canola	mitochondrion	61.5	65.83
CDY01809	Canola	extracellular	62.44	65.52
VIT_01s0010g03370.t01	Wine grape	plastid	62.44	65.2
Bra010943.1-P	Field mustard	cytosol	61.97	65.02
CDY12646	Canola	cytosol, plastid	61.03	64.68
VIT_17s0000g01520.t01	Wine grape	cytosol	63.38	64.59
CDY07422	Canola	mitochondrion	61.03	64.36
Zm00001d033767_P002	Maize	nucleus	60.09	64.32
GSMUA_Achr5P14560_001	Banana	cytosol	65.73	64.22
CDY15709	Canola	extracellular	63.38	63.68
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	63.38	62.79
CDY51350	Canola	cytosol, plastid	61.5	61.5
Zm00001d003788_P001	Maize	cytosol	25.35	61.36
Zm00001d011848_P001	Maize	nucleus	24.41	60.47
GSMUA_Achr5P18680_001	Banana	cytosol	65.26	59.66
VIT_18s0001g05140.t01	Wine grape	cytosol	33.33	57.72
Zm00001d038017_P001	Maize	nucleus	16.43	57.38
Zm00001d049547_P001	Maize	cytosol	27.7	57.28
GSMUA_Achr11P...	Banana	mitochondrion	64.79	56.33
CDY28886	Canola	extracellular	61.5	55.74

Protein Annotations

EntrezGene:100280639	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	UniProt:A0A1D6FNJ4	ProteinID:AQK93229.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	TMHMM:TMhelix	UniParc:UPI0008435564
EnsemblPlantsGene:Zm00001d010009	EnsemblPlants:Zm00001d010009_P003	EnsemblPlants:Zm00001d010009_T003	:	:	:

Description

ribosomal protein L17a ribosomal protein L17a

Coordinates

chr8:-:94987331..94992881

Molecular Weight (calculated)

24408.8 Da

IEP (calculated)

10.602

GRAVY (calculated)

-0.458

Length

213 amino acids

Sequence
(BLAST)

001: MEAEAEAELR CGKETRIVVW EGKLQCGRRR SMTLEMALMI SLFYILMTTF FVIPVATKAM GRDLRVHFKN TRETAFALRK LSLTKAKRYL EDVIAHKQAI
101: PFRRYCGGVG RTAQAKSRHS NGQGRWPVKS ARFILDLLKN AESNAEVKGL DVDTLYVSHI QVNQAQKQRR RTYRAHGRIN PYMSSPCHIE LILSEKEEPV
201: KKEAESQIAT RNA

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.