Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033999.1-P | Field mustard | nucleus | 82.16 | 100.0 |
| AT1G67430.1 | Thale cress | nucleus | 81.22 | 98.86 |
| CDY12646 | Canola | cytosol, plastid | 92.02 | 97.51 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 83.1 | 90.31 |
| CDY27616 | Canola | cytosol | 77.93 | 89.73 |
| CDY07422 | Canola | mitochondrion | 84.04 | 88.61 |
| CDX90084 | Canola | endoplasmic reticulum | 80.28 | 88.6 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 79.34 | 88.48 |
| CDY01809 | Canola | extracellular | 84.04 | 88.18 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 55.87 | 88.15 |
| PGSC0003DMT400039421 | Potato | nucleus | 71.36 | 87.86 |
| Solyc06g071870.2.1 | Tomato | nucleus | 70.42 | 85.71 |
| CDY56187 | Canola | mitochondrion | 79.81 | 85.43 |
| Solyc06g071880.2.1 | Tomato | cytosol | 54.93 | 85.4 |
| PGSC0003DMT400069384 | Potato | nucleus | 69.95 | 85.14 |
| CDY03920 | Canola | extracellular, mitochondrion | 77.93 | 85.13 |
| Os09t0258600-01 | Rice | nucleus | 67.61 | 84.21 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 67.14 | 84.12 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 67.14 | 84.12 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 67.14 | 84.12 |
| EER90536 | Sorghum | nucleus | 66.67 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 66.2 | 82.46 |
| EER90537 | Sorghum | nucleus | 66.2 | 82.46 |
| EES19208 | Sorghum | cytosol | 65.73 | 81.87 |
| Zm00001d031611_P001 | Maize | cytosol | 65.73 | 81.87 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 65.73 | 81.4 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 65.73 | 81.4 |
| Os08t0530200-01 | Rice | nucleus | 65.26 | 81.29 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 65.26 | 81.29 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 65.26 | 80.81 |
| CDY15709 | Canola | extracellular | 80.28 | 80.66 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 73.71 | 76.96 |
| CDY28886 | Canola | extracellular | 84.51 | 76.6 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 67.14 | 75.66 |
| HORVU5Hr1G052280.2 | Barley | plastid | 69.01 | 75.38 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 70.89 | 72.25 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 70.89 | 70.23 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 65.73 | 70.0 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 38.97 | 67.48 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 69.01 | 67.43 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 72.3 | 66.09 |
| Zm00001d010009_P003 | Maize | cytosol | 61.5 | 61.5 |
| OQU80827 | Sorghum | cytosol | 53.52 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 69.95 | 60.82 |
| Zm00001d033767_P002 | Maize | nucleus | 52.11 | 55.78 |
| CDX91455 | Canola | cytosol | 16.9 | 55.38 |
| Zm00001d003788_P001 | Maize | cytosol | 21.6 | 52.27 |
| Zm00001d011848_P001 | Maize | nucleus | 20.66 | 51.16 |
| Zm00001d038017_P001 | Maize | nucleus | 14.08 | 49.18 |
| Zm00001d049547_P001 | Maize | cytosol | 23.47 | 48.54 |
| CDY50459 | Canola | extracellular, plasma membrane | 16.9 | 46.75 |
| CDY50115 | Canola | cytosol | 19.25 | 44.57 |
| CDY65682 | Canola | cytosol | 17.37 | 41.11 |
| CDY24443 | Canola | cytosol | 37.56 | 30.19 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:A0A078IJX7 | UniProt:A0A078IJX7 | EnsemblPlants:CDY51350 | ProteinID:CDY51350 |
| ProteinID:CDY51350.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00003256001 |
| InterPro:IPR036394 | HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 |
| InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 |
| UniParc:UPI0004EE55CB | SEG:seg | : | : | : | : |
Description
BnaC02g45790DBnaC02g45790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJX7]
Coordinates
chrLK032987:+:71423..73150
Molecular Weight (calculated)
24266.2 Da
IEP (calculated)
10.836
GRAVY (calculated)
-0.599
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFIDHFIPI RVYVVSPNIK SSLHFSHRFC SQFSRLAAMV KYSQEPDNQT KSCKARGSDL RVHFKNTRET AHAIRKLPLL KAKRYLEDVI AHKQAIPFTR
101: FCRGVGRTAQ AKNRHSNGQG RWPAKSAQFV LDLLKNAESN AEVKGLDVDA LFISHIQVNQ AAKQRRRTYR AHGRINPYMS NPCHIELILS EKEESVKKEP
201: ETQLAAKSKK SAA
101: FCRGVGRTAQ AKNRHSNGQG RWPAKSAQFV LDLLKNAESN AEVKGLDVDA LFISHIQVNQ AAKQRRRTYR AHGRINPYMS NPCHIELILS EKEESVKKEP
201: ETQLAAKSKK SAA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.