Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- plasma membrane 4
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27616 | Canola | cytosol | 45.45 | 18.92 |
| KRH08728 | Soybean | cytosol, nucleus | 40.26 | 18.45 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 46.75 | 18.37 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 45.45 | 18.32 |
| KRH58763 | Soybean | nucleus | 42.86 | 18.23 |
| KRG97436 | Soybean | nucleus | 42.86 | 18.23 |
| CDX90084 | Canola | endoplasmic reticulum | 45.45 | 18.13 |
| CDY03920 | Canola | extracellular, mitochondrion | 45.45 | 17.95 |
| CDY12646 | Canola | cytosol, plastid | 46.75 | 17.91 |
| CDY07422 | Canola | mitochondrion | 46.75 | 17.82 |
| CDY01809 | Canola | extracellular | 46.75 | 17.73 |
| KRH31467 | Soybean | nucleus | 41.56 | 17.68 |
| CDY56187 | Canola | mitochondrion | 45.45 | 17.59 |
| KRH42661 | Soybean | nucleus | 41.56 | 16.93 |
| CDY51350 | Canola | cytosol, plastid | 46.75 | 16.9 |
| CDY15709 | Canola | extracellular | 45.45 | 16.51 |
| CDY28886 | Canola | extracellular | 46.75 | 15.32 |
| CDY50115 | Canola | cytosol | 14.29 | 11.96 |
| CDY24443 | Canola | cytosol | 40.26 | 11.7 |
| CDX91455 | Canola | cytosol | 7.79 | 9.23 |
| CDY65682 | Canola | cytosol | 7.79 | 6.67 |
Protein Annotations
| Gene3D:3.90.470.10 | MapMan:35.2 | GO:A0A078IM28 | UniProt:A0A078IM28 | EnsemblPlants:CDY50459 | ProteinID:CDY50459 |
| ProteinID:CDY50459.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00096745001 | InterPro:IPR036394 | InterPro:Ribosomal_L22/L17_sf |
| SignalP:SignalP-noTM | UniParc:UPI0004EC5CE3 | : | : | : | : |
Description
BnaC04g25050DBnaC04g25050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM28]
Coordinates
chrLK032912:-:101652..101885
Molecular Weight (calculated)
8985.3 Da
IEP (calculated)
10.867
GRAVY (calculated)
0.356
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MFNICCRFLL IMFQVQSRLS LINYALCGTL PLLKVKRFLE DVIYLTSKLI PFTRFCPGVG RTAQAKNRHF QWSRSLA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAELILSEK EEPVKKEPET QLAAKSKKSA A
101: SNAELILSEK EEPVKKEPET QLAAKSKKSA A
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.