Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08728 | Soybean | cytosol, nucleus | 42.22 | 22.62 |
| KRH58763 | Soybean | nucleus | 40.0 | 19.89 |
| KRG97436 | Soybean | nucleus | 40.0 | 19.89 |
| CDY27616 | Canola | cytosol | 40.0 | 19.46 |
| KRH31467 | Soybean | nucleus | 38.89 | 19.34 |
| CDX90084 | Canola | endoplasmic reticulum | 41.11 | 19.17 |
| KRH42661 | Soybean | nucleus | 40.0 | 19.05 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 41.11 | 18.88 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 40.0 | 18.85 |
| CDY56187 | Canola | mitochondrion | 41.11 | 18.59 |
| CDY03920 | Canola | extracellular, mitochondrion | 40.0 | 18.46 |
| CDY12646 | Canola | cytosol, plastid | 41.11 | 18.41 |
| CDY07422 | Canola | mitochondrion | 41.11 | 18.32 |
| CDY01809 | Canola | extracellular | 41.11 | 18.23 |
| CDY15709 | Canola | extracellular | 41.11 | 17.45 |
| CDY50115 | Canola | cytosol | 17.78 | 17.39 |
| CDY51350 | Canola | cytosol, plastid | 41.11 | 17.37 |
| CDY28886 | Canola | extracellular | 41.11 | 15.74 |
| CDX91455 | Canola | cytosol | 11.11 | 15.38 |
| CDY50459 | Canola | extracellular, plasma membrane | 6.67 | 7.79 |
| CDY24443 | Canola | cytosol | 13.33 | 4.53 |
Protein Annotations
| Gene3D:3.90.470.10 | MapMan:35.2 | GO:A0A078JK03 | UniProt:A0A078JK03 | EnsemblPlants:CDY65682 | ProteinID:CDY65682 |
| ProteinID:CDY65682.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00047988001 |
| InterPro:IPR036394 | PFAM:PF00237 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF18 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_euk/arc |
| InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | UniParc:UPI0004EEB09F | SEG:seg | : | : |
Description
BnaCnng48220DBnaCnng48220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK03]
Coordinates
chrLK034895:+:8215..8584
Molecular Weight (calculated)
10479.6 Da
IEP (calculated)
9.586
GRAVY (calculated)
-0.750
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEINEESNM NENLQCADRK KNKNVKGVLQ LLHMTEKLIQ EFSDKSRVKG LDVDALFISH IQVNQTAKQR RRTYRAHGNQ SYVLLYATLS
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.