CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08728	Soybean	cytosol, nucleus	27.92	44.05
CDY11812	Canola	cytosol, nucleus, plastid	30.94	42.93
CDY27616	Canola	cytosol	29.81	42.7
CDX90084	Canola	endoplasmic reticulum	30.94	42.49
KRH58763	Soybean	nucleus	28.68	41.99
CDY03920	Canola	extracellular, mitochondrion	30.57	41.54
CDX96093	Canola	endoplasmic reticulum, extracellular	30.57	41.33
KRH31467	Soybean	nucleus	27.92	40.88
KRG97436	Soybean	nucleus	27.92	40.88
CDY56187	Canola	mitochondrion	30.57	40.7
CDY07422	Canola	mitochondrion	30.94	40.59
CDY01809	Canola	extracellular	30.94	40.39
CDY50459	Canola	extracellular, plasma membrane	11.7	40.26
CDY12646	Canola	cytosol, plastid	30.19	39.8
KRH42661	Soybean	nucleus	28.3	39.68
CDY15709	Canola	extracellular	30.57	38.21
CDY51350	Canola	cytosol, plastid	30.19	37.56
CDY28886	Canola	extracellular	30.94	34.89
CDX91455	Canola	cytosol	8.3	33.85
CDY50115	Canola	cytosol	9.81	28.26
CDY65682	Canola	cytosol	4.53	13.33

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:A0A078GIJ1	UniProt:A0A078GIJ1	EnsemblPlants:CDY24443	ProteinID:CDY24443
ProteinID:CDY24443.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0008641	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00026699001	InterPro:IPR036394	PFAM:PF00237	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	SUPFAM:SSF69572	UniParc:UPI0004EDC9EF
InterPro:Ubiquitin-activating_enz	:	:	:	:	:

Description

BnaC05g35110DBnaC05g35110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIJ1]

Coordinates

chrLK032159:-:99568..102258

Molecular Weight (calculated)

30070.9 Da

IEP (calculated)

8.051

GRAVY (calculated)

-0.233

Length

265 amino acids

Sequence
(BLAST)

001: MDRIEVTNLN RQFLFRLEDE ESLRKRPRIA SAAESFVNRI HEHSLNSARC QEAIRKLPLL KAKRYLEDVI AHKQAITFTR FCRGVGRNAL AKNMHSNGQE
101: RWPAKSAQFV LDSLKNAEIN AEVIAYVVVF DVLEPPLTEC NFWHSFLFRQ RQTQVRPSSD LGVGDMNCFT SSTKYEGYRV LCTEKAELIE TGSGCATYPA
201: LMGSLPACSD LTSVGVVRYR VELSISDGTE SAVFFVFYAE ISWLTNVRAA EISELRSVQK QQVMN

Best Arabidopsis Sequence Match ( AT1G67430.2 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAELILSEK EEPVKKEPET QLAAKSKKSA A

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.