Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11812 | Canola | cytosol, nucleus, plastid | 93.26 | 94.24 |
| CDY27616 | Canola | cytosol | 89.64 | 93.51 |
| CDY56187 | Canola | mitochondrion | 91.71 | 88.94 |
| CDY03920 | Canola | extracellular, mitochondrion | 88.6 | 87.69 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 60.62 | 86.67 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 87.56 | 86.22 |
| Bra010943.1-P | Field mustard | cytosol | 90.67 | 86.21 |
| Solyc06g071880.2.1 | Tomato | cytosol | 61.14 | 86.13 |
| PGSC0003DMT400039421 | Potato | nucleus | 77.2 | 86.13 |
| Solyc06g071870.2.1 | Tomato | nucleus | 77.72 | 85.71 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 75.13 | 85.29 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 75.13 | 85.29 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 75.13 | 85.29 |
| PGSC0003DMT400069384 | Potato | nucleus | 77.2 | 85.14 |
| CDY12646 | Canola | cytosol, plastid | 88.6 | 85.07 |
| Os09t0258600-01 | Rice | nucleus | 75.13 | 84.8 |
| CDY15709 | Canola | extracellular | 92.23 | 83.96 |
| CDY07422 | Canola | mitochondrion | 87.56 | 83.66 |
| EER90536 | Sorghum | nucleus | 74.09 | 83.63 |
| CDY01809 | Canola | extracellular | 87.56 | 83.25 |
| Zm00001d049815_P002 | Maize | cytosol | 73.58 | 83.04 |
| EER90537 | Sorghum | nucleus | 73.58 | 83.04 |
| EES19208 | Sorghum | cytosol | 73.06 | 82.46 |
| Zm00001d031611_P001 | Maize | cytosol | 73.06 | 82.46 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 73.06 | 81.98 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 73.06 | 81.98 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 72.54 | 81.87 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 72.54 | 81.4 |
| Os08t0530200-01 | Rice | nucleus | 72.02 | 81.29 |
| CDY51350 | Canola | cytosol, plastid | 88.6 | 80.28 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 76.68 | 78.31 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 80.83 | 76.47 |
| HORVU5Hr1G052280.2 | Barley | plastid | 75.65 | 74.87 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 81.87 | 73.49 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 78.76 | 72.73 |
| CDY28886 | Canola | extracellular | 87.56 | 71.91 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 72.54 | 70.0 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 77.72 | 68.81 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 42.49 | 66.67 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 78.76 | 65.24 |
| Zm00001d010009_P003 | Maize | cytosol | 68.91 | 62.44 |
| OQU80827 | Sorghum | cytosol | 59.59 | 61.5 |
| GSMUA_Achr11P... | Banana | mitochondrion | 76.68 | 60.41 |
| CDX91455 | Canola | cytosol | 18.65 | 55.38 |
| Zm00001d033767_P002 | Maize | nucleus | 56.48 | 54.77 |
| Zm00001d003788_P001 | Maize | cytosol | 24.87 | 54.55 |
| Zm00001d011848_P001 | Maize | nucleus | 23.83 | 53.49 |
| Zm00001d038017_P001 | Maize | nucleus | 16.58 | 52.46 |
| Zm00001d049547_P001 | Maize | cytosol | 26.94 | 50.49 |
| CDY50459 | Canola | extracellular, plasma membrane | 18.13 | 45.45 |
| CDY50115 | Canola | cytosol | 21.24 | 44.57 |
| CDY65682 | Canola | cytosol | 19.17 | 41.11 |
| CDY24443 | Canola | cytosol | 42.49 | 30.94 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:A0A078DNK6 | EnsemblPlants:CDX90084 | ProteinID:CDX90084 | ProteinID:CDX90084.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00150600001 | InterPro:IPR036394 | HAMAP:MF_01331_A |
| PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS |
| InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI0004EF184D | SEG:seg |
Description
BnaA08g19000D
Coordinates
chrLK031862:+:4834..6563
Molecular Weight (calculated)
21851.3 Da
IEP (calculated)
10.829
GRAVY (calculated)
-0.645
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVFFKSLVH QIFSLAVMVK YSQEPDNTTK SCKARGADLR VHFKNTRETA HAIRKLPLNK AKRYLEDVIA HKQAIPFTRF CRGVGRTAQA KNRHSNGQGR
101: WPAKSAQFVL DLLKNAESNA EVKGLDVDAL FISHIQVNQA AKQRRRTYRA HGRINPYMSN PCHIELILSE KEEPVKKEPE TQLAAKSKKG TSS
101: WPAKSAQFVL DLLKNAESNA EVKGLDVDAL FISHIQVNQA AKQRRRTYRA HGRINPYMSN PCHIELILSE KEEPVKKEPE TQLAAKSKKG TSS
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.