Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G260500.1 | Wheat | cytosol | 99.42 | 99.42 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 99.42 | 99.42 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 88.37 | 89.41 |
| Zm00001d049815_P002 | Maize | cytosol | 85.47 | 85.96 |
| Zm00001d031611_P001 | Maize | cytosol | 84.88 | 85.38 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 98.84 | 85.0 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 65.7 | 83.7 |
| Os08t0530200-01 | Rice | nucleus | 83.14 | 83.63 |
| PGSC0003DMT400039421 | Potato | nucleus | 82.56 | 82.08 |
| KRH08728 | Soybean | cytosol, nucleus | 79.65 | 81.55 |
| Solyc06g071880.2.1 | Tomato | cytosol | 64.53 | 81.02 |
| Bra032828.1-P | Field mustard | cytosol | 81.98 | 80.11 |
| AT1G67430.1 | Thale cress | nucleus | 81.4 | 80.0 |
| Solyc06g071870.2.1 | Tomato | nucleus | 81.4 | 80.0 |
| KRH58763 | Soybean | nucleus | 83.72 | 79.56 |
| KRG97436 | Soybean | nucleus | 83.72 | 79.56 |
| AT1G27400.1 | Thale cress | cytosol | 81.4 | 79.55 |
| Bra033999.1-P | Field mustard | nucleus | 80.81 | 79.43 |
| PGSC0003DMT400069384 | Potato | nucleus | 80.81 | 79.43 |
| KRH31467 | Soybean | nucleus | 82.56 | 78.45 |
| Bra004225.1-P | Field mustard | nucleus | 78.49 | 77.14 |
| CDY27616 | Canola | cytosol | 81.4 | 75.68 |
| KRH42661 | Soybean | nucleus | 83.14 | 75.66 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 81.4 | 74.07 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 80.81 | 72.77 |
| CDX90084 | Canola | endoplasmic reticulum | 81.4 | 72.54 |
| CDY03920 | Canola | extracellular, mitochondrion | 80.81 | 71.28 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 80.81 | 70.92 |
| CDY56187 | Canola | mitochondrion | 81.98 | 70.85 |
| CDY12646 | Canola | cytosol, plastid | 80.81 | 69.15 |
| CDY07422 | Canola | mitochondrion | 80.81 | 68.81 |
| CDY01809 | Canola | extracellular | 80.81 | 68.47 |
| Bra010943.1-P | Field mustard | cytosol | 80.81 | 68.47 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 80.23 | 67.65 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 81.4 | 66.99 |
| CDY15709 | Canola | extracellular | 81.4 | 66.04 |
| CDY51350 | Canola | cytosol, plastid | 80.81 | 65.26 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 82.56 | 65.14 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 80.23 | 64.19 |
| OQU80827 | Sorghum | cytosol | 69.77 | 64.17 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 43.6 | 60.98 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 81.98 | 60.52 |
| Zm00001d003788_P001 | Maize | cytosol | 30.81 | 60.23 |
| Zm00001d011848_P001 | Maize | nucleus | 29.65 | 59.3 |
| CDY28886 | Canola | extracellular | 80.81 | 59.15 |
| GSMUA_Achr11P... | Banana | mitochondrion | 81.4 | 57.14 |
| Zm00001d038017_P001 | Maize | nucleus | 19.77 | 55.74 |
| Zm00001d049547_P001 | Maize | cytosol | 32.56 | 54.37 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR036394 |
| HAMAP:MF_01331_A | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF18 | InterPro:Ribosomal_L22 |
| InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | EnsemblPlantsGene:TraesCS7A01G259500 |
| EnsemblPlants:TraesCS7A01G259500.1 | TIGR:cd00336 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:251283755..251285978
Molecular Weight (calculated)
19686.8 Da
IEP (calculated)
10.815
GRAVY (calculated)
-0.833
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSRDPSN PTKSAKACGK DLRVHFKNTR ETAFALRRMP LGKAKRYLED VLAHKQAIPF RRYCRGVGRT AQVKNHQPNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DNLYISHIQV NQAQKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EADNVVAPRK AI
101: SNAEVKGLDV DNLYISHIQV NQAQKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EADNVVAPRK AI
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.