Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0258600-01 | Rice | nucleus | 81.48 | 90.06 |
| EER90537 | Sorghum | nucleus | 80.42 | 88.89 |
| EES19208 | Sorghum | cytosol | 79.89 | 88.3 |
| EER90536 | Sorghum | nucleus | 79.89 | 88.3 |
| KRH58763 | Soybean | nucleus | 84.13 | 87.85 |
| KRH31467 | Soybean | nucleus | 83.6 | 87.29 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 78.31 | 86.55 |
| Zm00001d049815_P002 | Maize | cytosol | 77.25 | 85.38 |
| Os08t0530200-01 | Rice | nucleus | 77.25 | 85.38 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 60.85 | 85.19 |
| Zm00001d031611_P001 | Maize | cytosol | 76.72 | 84.8 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 76.19 | 84.71 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 76.19 | 84.71 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 76.19 | 84.71 |
| KRH42661 | Soybean | nucleus | 84.13 | 84.13 |
| AT1G27400.1 | Thale cress | cytosol | 78.31 | 84.09 |
| KRG97436 | Soybean | nucleus | 80.42 | 83.98 |
| Solyc06g071880.2.1 | Tomato | cytosol | 60.85 | 83.94 |
| Bra032828.1-P | Field mustard | cytosol | 77.78 | 83.52 |
| PGSC0003DMT400039421 | Potato | nucleus | 76.19 | 83.24 |
| KRH08728 | Soybean | cytosol, nucleus | 73.55 | 82.74 |
| AT1G67430.1 | Thale cress | nucleus | 76.19 | 82.29 |
| Solyc06g071870.2.1 | Tomato | nucleus | 76.19 | 82.29 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 74.6 | 81.98 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 74.6 | 81.98 |
| Bra033999.1-P | Field mustard | nucleus | 75.66 | 81.71 |
| PGSC0003DMT400069384 | Potato | nucleus | 75.66 | 81.71 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 74.07 | 81.4 |
| CDY27616 | Canola | cytosol | 78.31 | 80.0 |
| Bra004225.1-P | Field mustard | nucleus | 74.07 | 80.0 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 89.42 | 77.52 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 77.78 | 76.96 |
| CDX90084 | Canola | endoplasmic reticulum | 78.31 | 76.68 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 82.01 | 75.98 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 93.12 | 75.54 |
| CDY03920 | Canola | extracellular, mitochondrion | 77.78 | 75.38 |
| HORVU5Hr1G052280.2 | Barley | plastid | 77.25 | 74.87 |
| CDY56187 | Canola | mitochondrion | 78.31 | 74.37 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 80.95 | 73.21 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 75.66 | 72.96 |
| Bra010943.1-P | Field mustard | cytosol | 77.25 | 71.92 |
| CDY12646 | Canola | cytosol, plastid | 76.19 | 71.64 |
| CDY07422 | Canola | mitochondrion | 76.19 | 71.29 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 80.95 | 71.16 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 75.13 | 71.0 |
| CDY01809 | Canola | extracellular | 75.66 | 70.44 |
| CDY15709 | Canola | extracellular | 78.84 | 70.28 |
| CDY51350 | Canola | cytosol, plastid | 75.66 | 67.14 |
| Zm00001d010009_P003 | Maize | cytosol | 73.55 | 65.26 |
| GSMUA_Achr11P... | Banana | mitochondrion | 84.13 | 64.9 |
| OQU80827 | Sorghum | cytosol | 64.02 | 64.71 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 41.27 | 63.41 |
| Zm00001d003788_P001 | Maize | cytosol | 29.1 | 62.5 |
| Zm00001d038017_P001 | Maize | nucleus | 20.11 | 62.3 |
| Zm00001d011848_P001 | Maize | nucleus | 28.04 | 61.63 |
| CDY28886 | Canola | extracellular | 76.19 | 61.28 |
| Zm00001d033767_P002 | Maize | nucleus | 62.43 | 59.3 |
| Zm00001d049547_P001 | Maize | cytosol | 30.16 | 55.34 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 |
| EnsemblPlantsGene:GSMUA_Achr4G16010_001 | EnsemblPlants:GSMUA_Achr4P16010_001 | EnsemblPlants:GSMUA_Achr4T16010_001 | InterPro:IPR036394 | UniProt:M0SPB5 | HAMAP:MF_01331_A |
| PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS |
| InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI00029630D3 | SEG:seg |
Description
60S ribosomal protein L17 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16010_001]
Coordinates
chr4:-:14129841..14133451
Molecular Weight (calculated)
21611.1 Da
IEP (calculated)
11.249
GRAVY (calculated)
-0.848
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHFRHQVKY SREPTNPTKS SKAMGRDLRV HFKNTRETAH AIRKLPLAKA KRYLEDVIAH KQAIPFRRFC GGVGRTAQVK GRHPNGQGRW PLKSARFILD
101: LLKNAESNAE VKGLDVDALY ISHIQVNQAQ RQRRRTYRAH GRINPYMSSP CHIELILSEK EEPVKKEPET QIAPSKPKKS QAIRSGASS
101: LLKNAESNAE VKGLDVDALY ISHIQVNQAQ RQRRRTYRAH GRINPYMSSP CHIELILSEK EEPVKKEPET QIAPSKPKKS QAIRSGASS
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.