Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G67430.1 | Thale cress | nucleus | 98.86 | 98.86 |
| Bra004225.1-P | Field mustard | nucleus | 97.14 | 97.14 |
| Bra032828.1-P | Field mustard | cytosol | 94.86 | 94.32 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 68.0 | 88.15 |
| PGSC0003DMT400039421 | Potato | nucleus | 86.86 | 87.86 |
| Solyc06g071870.2.1 | Tomato | nucleus | 85.71 | 85.71 |
| Solyc06g071880.2.1 | Tomato | cytosol | 66.86 | 85.4 |
| PGSC0003DMT400069384 | Potato | nucleus | 85.14 | 85.14 |
| KRH08728 | Soybean | cytosol, nucleus | 81.71 | 85.12 |
| Os09t0258600-01 | Rice | nucleus | 82.29 | 84.21 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 81.71 | 84.12 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.71 | 84.12 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 81.71 | 84.12 |
| KRH58763 | Soybean | nucleus | 86.86 | 83.98 |
| KRG97436 | Soybean | nucleus | 86.29 | 83.43 |
| EER90536 | Sorghum | nucleus | 81.14 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 80.57 | 82.46 |
| EER90537 | Sorghum | nucleus | 80.57 | 82.46 |
| KRH31467 | Soybean | nucleus | 85.14 | 82.32 |
| CDY51350 | Canola | cytosol, plastid | 100.0 | 82.16 |
| Zm00001d031611_P001 | Maize | cytosol | 80.0 | 81.87 |
| EES19208 | Sorghum | cytosol | 80.0 | 81.87 |
| Bra010943.1-P | Field mustard | cytosol | 94.86 | 81.77 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 80.0 | 81.4 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 80.0 | 81.4 |
| Os08t0530200-01 | Rice | nucleus | 79.43 | 81.29 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 79.43 | 81.29 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 79.43 | 80.81 |
| KRH42661 | Soybean | nucleus | 86.29 | 79.89 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 81.71 | 75.66 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 85.71 | 73.53 |
| HORVU5Hr1G052280.2 | Barley | plastid | 81.71 | 73.33 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 84.57 | 70.81 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 86.29 | 70.23 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 79.43 | 69.5 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 47.43 | 67.48 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 84.0 | 67.43 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 83.43 | 62.66 |
| Zm00001d010009_P003 | Maize | cytosol | 74.29 | 61.03 |
| OQU80827 | Sorghum | cytosol | 65.14 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 84.0 | 60.0 |
| Zm00001d033767_P002 | Maize | nucleus | 61.71 | 54.27 |
| Zm00001d003788_P001 | Maize | cytosol | 26.29 | 52.27 |
| Zm00001d011848_P001 | Maize | nucleus | 25.14 | 51.16 |
| Zm00001d038017_P001 | Maize | nucleus | 17.14 | 49.18 |
| Zm00001d049547_P001 | Maize | cytosol | 28.57 | 48.54 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | EnsemblPlantsGene:Bra033999 | EnsemblPlants:Bra033999.1 | EnsemblPlants:Bra033999.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 |
| InterPro:IPR036394 | UniProt:M4EYV7 | PFAM:PF00237 | ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 |
| InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 |
| UniParc:UPI0002545F15 | SEG:seg | : | : | : | : |
Description
AT1G67430 (E=5e-086) | 60S ribosomal protein L17 (RPL17B)
Coordinates
chrA02:+:10336595..10337777
Molecular Weight (calculated)
19844.8 Da
IEP (calculated)
10.792
GRAVY (calculated)
-0.801
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LLKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEESVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEESVKK EPETQLAAKS KKSAA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.