CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58763	Soybean	nucleus	95.58	95.58
KRG97436	Soybean	nucleus	93.37	93.37
KRH08728	Soybean	cytosol, nucleus	85.08	91.67
KRH42661	Soybean	nucleus	95.58	91.53
EES19208	Sorghum	cytosol	85.08	90.06
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	83.98	88.89
EER90537	Sorghum	nucleus	83.98	88.89
EER90536	Sorghum	nucleus	83.98	88.89
Os09t0258600-01	Rice	nucleus	83.43	88.3
Solyc03g111230.2.1	Tomato	nucleus, unclear	65.75	88.15
AT1G27400.1	Thale cress	cytosol	85.64	88.07
PGSC0003DMT400039421	Potato	nucleus	83.98	87.86
Zm00001d049815_P002	Maize	cytosol	82.87	87.72
Solyc06g071880.2.1	Tomato	cytosol	66.3	87.59
Bra032828.1-P	Field mustard	cytosol	85.08	87.5
Zm00001d031611_P001	Maize	cytosol	82.32	87.13
Solyc06g071870.2.1	Tomato	nucleus	83.98	86.86
PGSC0003DMT400069384	Potato	nucleus	83.43	86.29
AT1G67430.1	Thale cress	nucleus	82.87	85.71
TraesCS5D01G174700.1	Wheat	cytosol	80.11	85.29
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	80.11	85.29
Bra033999.1-P	Field mustard	nucleus	82.32	85.14
TraesCS5A01G170300.1	Wheat	cytosol	79.56	84.71
Os08t0530200-01	Rice	nucleus	79.01	83.63
GSMUA_Achr4P16010_001	Banana	nucleus	87.29	83.6
Bra004225.1-P	Field mustard	nucleus	80.66	83.43
TraesCS7D01G260500.1	Wheat	cytosol	79.01	83.14
TraesCS7B01G157300.1	Wheat	golgi, unclear	79.01	83.14
TraesCS7A01G259500.1	Wheat	cytosol	78.45	82.56
VIT_01s0010g03370.t01	Wine grape	plastid	90.61	80.39
VIT_17s0000g01520.t01	Wine grape	cytosol	89.5	77.51
Bra010943.1-P	Field mustard	cytosol	84.53	75.37
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	89.5	75.35
HORVU5Hr1G052280.2	Barley	plastid	80.11	74.36
GSMUA_Achr5P14560_001	Banana	cytosol	87.85	72.94
HORVU7Hr1G054010.2	Barley	mitochondrion	78.45	71.0
VIT_18s0001g05140.t01	Wine grape	cytosol	46.41	68.29
GSMUA_Achr5P18680_001	Banana	cytosol	87.85	68.24
OQU80827	Sorghum	cytosol	68.51	66.31
Zm00001d010009_P003	Maize	cytosol	77.9	66.2
GSMUA_Achr11P...	Banana	mitochondrion	82.32	60.82
Zm00001d003788_P001	Maize	cytosol	29.28	60.23
Zm00001d033767_P002	Maize	nucleus	65.75	59.8
Zm00001d011848_P001	Maize	nucleus	28.18	59.3
Zm00001d038017_P001	Maize	nucleus	19.89	59.02
Zm00001d049547_P001	Maize	cytosol	31.49	55.34
CDX91455	Canola	cytosol	19.34	53.85
CDY50115	Canola	cytosol	22.1	43.48
CDY50459	Canola	extracellular, plasma membrane	17.68	41.56
CDY65682	Canola	cytosol	19.34	38.89
CDY24443	Canola	cytosol	40.88	27.92

Protein Annotations

EntrezGene:100800781	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:ACUP02007145	EnsemblPlantsGene:GLYMA_11G249700	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	UniProt:I1LN92	InterPro:IPR036394	EnsemblPlants:KRH31467
ProteinID:KRH31467	ProteinID:KRH31467.1	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593
PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843
TIGRFAMs:TIGR01038	UniParc:UPI000233D84B	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:34167757..34169935

Molecular Weight (calculated)

20396.6 Da

IEP (calculated)

10.910

GRAVY (calculated)

-0.749

Length

181 amino acids

Sequence
(BLAST)

001: MVKYSREPDN PTKSCKARGA DLRVHFKNTR ETAFAIRKLP LVKAKRYLED VLAHKQAIPF RRFCGGVGRT AQAKSRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DALYISHVQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EAETQLATSK KKGALRSGAS S

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.