CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31467	Soybean	nucleus	93.37	93.37
KRH08728	Soybean	cytosol, nucleus	86.19	92.86
KRH58763	Soybean	nucleus	92.82	92.82
EES19208	Sorghum	cytosol	85.08	90.06
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	83.98	88.89
EER90537	Sorghum	nucleus	83.98	88.89
EER90536	Sorghum	nucleus	83.98	88.89
Solyc03g111230.2.1	Tomato	nucleus, unclear	66.3	88.89
PGSC0003DMT400039421	Potato	nucleus	84.53	88.44
KRH42661	Soybean	nucleus	92.27	88.36
Os09t0258600-01	Rice	nucleus	83.43	88.3
Zm00001d049815_P002	Maize	cytosol	82.87	87.72
Solyc06g071880.2.1	Tomato	cytosol	66.3	87.59
AT1G27400.1	Thale cress	cytosol	85.08	87.5
Zm00001d031611_P001	Maize	cytosol	82.32	87.13
Bra032828.1-P	Field mustard	cytosol	84.53	86.93
AT1G67430.1	Thale cress	nucleus	83.98	86.86
Solyc06g071870.2.1	Tomato	nucleus	83.98	86.86
TraesCS5D01G174700.1	Wheat	cytosol	81.22	86.47
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	81.22	86.47
Bra033999.1-P	Field mustard	nucleus	83.43	86.29
PGSC0003DMT400069384	Potato	nucleus	83.43	86.29
TraesCS5A01G170300.1	Wheat	cytosol	80.66	85.88
TraesCS7D01G260500.1	Wheat	cytosol	80.11	84.3
TraesCS7B01G157300.1	Wheat	golgi, unclear	80.11	84.3
Bra004225.1-P	Field mustard	nucleus	81.22	84.0
TraesCS7A01G259500.1	Wheat	cytosol	79.56	83.72
Os08t0530200-01	Rice	nucleus	79.01	83.63
GSMUA_Achr4P16010_001	Banana	nucleus	83.98	80.42
VIT_01s0010g03370.t01	Wine grape	plastid	88.4	78.43
HORVU5Hr1G052280.2	Barley	plastid	81.22	75.38
Bra010943.1-P	Field mustard	cytosol	84.53	75.37
VIT_17s0000g01520.t01	Wine grape	cytosol	86.19	74.64
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	87.29	73.49
HORVU7Hr1G054010.2	Barley	mitochondrion	79.56	72.0
VIT_18s0001g05140.t01	Wine grape	cytosol	47.51	69.92
GSMUA_Achr5P14560_001	Banana	cytosol	83.98	69.72
OQU80827	Sorghum	cytosol	68.51	66.31
Zm00001d010009_P003	Maize	cytosol	77.9	66.2
GSMUA_Achr5P18680_001	Banana	cytosol	84.53	65.67
GSMUA_Achr11P...	Banana	mitochondrion	82.87	61.22
Zm00001d033767_P002	Maize	nucleus	65.19	59.3
Zm00001d003788_P001	Maize	cytosol	28.18	57.95
Zm00001d011848_P001	Maize	nucleus	27.07	56.98
Zm00001d038017_P001	Maize	nucleus	18.23	54.1
CDX91455	Canola	cytosol	19.34	53.85
Zm00001d049547_P001	Maize	cytosol	30.39	53.4
CDY50115	Canola	cytosol	22.65	44.57
CDY50459	Canola	extracellular, plasma membrane	18.23	42.86
CDY65682	Canola	cytosol	19.89	40.0
CDY24443	Canola	cytosol	40.88	27.92

Protein Annotations

EntrezGene:100305777	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:ACUP02010798	EMBL:BT089557	UniProt:C6SWL4
EnsemblPlantsGene:GLYMA_18G007500	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036394
EnsemblPlants:KRG97436	ProteinID:KRG97436	ProteinID:KRG97436.1	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464
PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf
SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI0001B14FE0	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:563494..565524

Molecular Weight (calculated)

20437.7 Da

IEP (calculated)

10.910

GRAVY (calculated)

-0.762

Length

181 amino acids

Sequence
(BLAST)

001: MVKYSREPDN PTKSCKARGA DLRVHFKNTR ETAFAIRKLP LVKAKRYLED VLAHKQAIPF RRFCGGVGRT AQAKNRHSNG QGRWPVKSAK FILDLLKNAE
101: SNAEVKGLDV DALYISHIQV NQAQKQRRRT YRAHGRINPY MSSPCHIELI LSEKEEPVKK EAETQLATSK KKGALRSGAS S

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.