Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032828.1-P | Field mustard | cytosol | 84.73 | 97.73 |
| Bra033999.1-P | Field mustard | nucleus | 81.77 | 94.86 |
| Bra004225.1-P | Field mustard | nucleus | 80.3 | 93.14 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 85.71 | 91.1 |
| CDX90084 | Canola | endoplasmic reticulum | 86.21 | 90.67 |
| KRH58763 | Soybean | nucleus | 77.34 | 86.74 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 57.64 | 86.67 |
| Solyc06g071880.2.1 | Tomato | cytosol | 58.13 | 86.13 |
| PGSC0003DMT400039421 | Potato | nucleus | 72.91 | 85.55 |
| Solyc06g071870.2.1 | Tomato | nucleus | 73.4 | 85.14 |
| KRH08728 | Soybean | cytosol, nucleus | 70.44 | 85.12 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 70.94 | 84.71 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 70.94 | 84.71 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 70.94 | 84.71 |
| PGSC0003DMT400069384 | Potato | nucleus | 72.91 | 84.57 |
| KRH31467 | Soybean | nucleus | 75.37 | 84.53 |
| KRG97436 | Soybean | nucleus | 75.37 | 84.53 |
| Os09t0258600-01 | Rice | nucleus | 70.94 | 84.21 |
| EER90536 | Sorghum | nucleus | 69.95 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 69.46 | 82.46 |
| EER90537 | Sorghum | nucleus | 69.46 | 82.46 |
| KRH42661 | Soybean | nucleus | 76.35 | 82.01 |
| Zm00001d031611_P001 | Maize | cytosol | 68.97 | 81.87 |
| EES19208 | Sorghum | cytosol | 68.97 | 81.87 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 68.97 | 81.4 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 68.97 | 81.4 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 68.47 | 81.29 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 68.47 | 80.81 |
| Os08t0530200-01 | Rice | nucleus | 67.98 | 80.7 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 71.92 | 77.25 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 75.37 | 75.0 |
| HORVU5Hr1G052280.2 | Barley | plastid | 70.94 | 73.85 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 73.89 | 71.77 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 74.88 | 70.7 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 68.47 | 69.5 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 72.91 | 67.89 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 40.39 | 66.67 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 73.4 | 63.95 |
| Zm00001d010009_P003 | Maize | cytosol | 65.02 | 61.97 |
| OQU80827 | Sorghum | cytosol | 56.16 | 60.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 71.92 | 59.59 |
| Zm00001d003788_P001 | Maize | cytosol | 23.65 | 54.55 |
| Zm00001d033767_P002 | Maize | nucleus | 53.2 | 54.27 |
| Zm00001d011848_P001 | Maize | nucleus | 22.66 | 53.49 |
| Zm00001d038017_P001 | Maize | nucleus | 15.76 | 52.46 |
| Zm00001d049547_P001 | Maize | cytosol | 25.62 | 50.49 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | EnsemblPlantsGene:Bra010943 | EnsemblPlants:Bra010943.1 | EnsemblPlants:Bra010943.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR036394 | UniProt:M4D389 | PFAM:PF00237 |
| ScanProsite:PS00464 | PANTHER:PTHR11593 | PANTHER:PTHR11593:SF17 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc |
| InterPro:Ribosomal_L22/L17_sf | SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI0002545A62 | SEG:seg | : |
Description
AT1G27400 (E=9e-082) | 60S ribosomal protein L17 (RPL17A)
Coordinates
chrA08:-:17220017..17221533
Molecular Weight (calculated)
22989.4 Da
IEP (calculated)
10.094
GRAVY (calculated)
-0.705
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSQEPDN TTKCENTLLL ASLCYWGFSS DIDLNDHDYV ACKARGADLR VHFKNTRETA HAIRKLPLNK AKRYLEDVIA HKQAIPFTRF CRGVGRTAQA
101: KNRHSNGQGR WPAKSAQFVL DLLKNAESNA EVKGLDVDAL FISHIQVNQA AKQRRRTYRA HGRINPYMSN PCHIELILSE KEEPVKKEPE TQLAAKSKKG
201: TSS
101: KNRHSNGQGR WPAKSAQFVL DLLKNAESNA EVKGLDVDAL FISHIQVNQA AKQRRRTYRA HGRINPYMSN PCHIELILSE KEEPVKKEPE TQLAAKSKKG
201: TSS
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Arabidopsis Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.