Factsheet for GSMUA_Achr5P18680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16010_001	Banana	nucleus	75.54	93.12
EER90537	Sorghum	nucleus	66.95	91.23
EER90536	Sorghum	nucleus	66.52	90.64
Os09t0258600-01	Rice	nucleus	66.09	90.06
EES19208	Sorghum	cytosol	65.24	88.89
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	64.81	88.3
KRH58763	Soybean	nucleus	68.24	87.85
KRH31467	Soybean	nucleus	68.24	87.85
Os08t0530200-01	Rice	nucleus	63.95	87.13
Zm00001d049815_P002	Maize	cytosol	63.52	86.55
Zm00001d031611_P001	Maize	cytosol	63.09	85.96
AT1G27400.1	Thale cress	cytosol	64.81	85.8
Bra032828.1-P	Field mustard	cytosol	64.38	85.23
Solyc03g111230.2.1	Tomato	nucleus, unclear	49.36	85.19
TraesCS5D01G174700.1	Wheat	cytosol	61.8	84.71
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	61.8	84.71
TraesCS5A01G170300.1	Wheat	cytosol	61.8	84.71
KRG97436	Soybean	nucleus	65.67	84.53
KRH42661	Soybean	nucleus	68.24	84.13
AT1G67430.1	Thale cress	nucleus	63.09	84.0
Solyc06g071880.2.1	Tomato	cytosol	49.36	83.94
PGSC0003DMT400039421	Potato	nucleus	62.23	83.81
Bra033999.1-P	Field mustard	nucleus	62.66	83.43
KRH08728	Soybean	cytosol, nucleus	60.09	83.33
Solyc06g071870.2.1	Tomato	nucleus	62.23	82.86
TraesCS7D01G260500.1	Wheat	cytosol	60.94	82.56
TraesCS7B01G157300.1	Wheat	golgi, unclear	60.94	82.56
PGSC0003DMT400069384	Potato	nucleus	61.8	82.29
TraesCS7A01G259500.1	Wheat	cytosol	60.52	81.98
Bra004225.1-P	Field mustard	nucleus	61.37	81.71
CDY27616	Canola	cytosol	64.38	81.08
GSMUA_Achr5P14560_001	Banana	cytosol	74.68	79.82
CDY11812	Canola	cytosol, nucleus, plastid	65.24	79.58
CDX90084	Canola	endoplasmic reticulum	65.24	78.76
VIT_01s0010g03370.t01	Wine grape	plastid	67.81	77.45
CDY03920	Canola	extracellular, mitochondrion	64.81	77.44
CDX96093	Canola	endoplasmic reticulum, extracellular	64.38	76.53
CDY56187	Canola	mitochondrion	65.24	76.38
VIT_17s0000g01520.t01	Wine grape	cytosol	67.81	75.6
HORVU5Hr1G052280.2	Barley	plastid	63.09	75.38
CDY12646	Canola	cytosol, plastid	64.81	75.12
CDY07422	Canola	mitochondrion	64.81	74.75
CDY01809	Canola	extracellular	64.38	73.89
CDY15709	Canola	extracellular	66.95	73.58
Bra010943.1-P	Field mustard	cytosol	63.95	73.4
CDY51350	Canola	cytosol, plastid	66.09	72.3
HORVU7Hr1G054010.2	Barley	mitochondrion	61.37	71.5
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	64.81	70.23
GSMUA_Achr11P...	Banana	mitochondrion	73.82	70.2
OQU80827	Sorghum	cytosol	52.79	65.78
Zm00001d010009_P003	Maize	cytosol	59.66	65.26
CDY28886	Canola	extracellular	65.67	65.11
VIT_18s0001g05140.t01	Wine grape	cytosol	33.91	64.23
Zm00001d033767_P002	Maize	nucleus	53.22	62.31
Zm00001d038017_P001	Maize	nucleus	15.88	60.66
Zm00001d003788_P001	Maize	cytosol	22.75	60.23
Zm00001d011848_P001	Maize	nucleus	21.89	59.3
Zm00001d049547_P001	Maize	cytosol	24.03	54.37

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr5G18680_001	EnsemblPlants:GSMUA_Achr5P18680_001	EnsemblPlants:GSMUA_Achr5T18680_001	InterPro:IPR036394	UniProt:M0SZP7	HAMAP:MF_01331_A
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF18	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI000296EF7D	SEG:seg

Description

60S ribosomal protein L17 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18680_001]

Coordinates

chr5:-:20173946..20178237

Molecular Weight (calculated)

25882.1 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.560

Length

233 amino acids

Sequence
(BLAST)

001: MQTCILKHSS FVGSVIFVEP PHLEATASPF APSLLLQSVQ VGDSDDSSAA MVKYSREPSN PTKSAKAMGR DLRVHFKNTR ETAHAIRKLP LSKAKRYLED
101: VIAHKQAIPF RRFCGGVGRT AQAKGRHPNG QGRWPLKSAR FILDLLKNAE SNAEVKGLDV DALFISHIQV NQAQRQRRRT YRAHGRINPY MSSPCHIELI
201: LSEKEEPVKK EPETQIAPSK PKKAQAIRSG ASS

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.