CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27616	Canola	cytosol	87.69	92.43
CDY11812	Canola	cytosol, nucleus, plastid	87.18	89.01
CDX90084	Canola	endoplasmic reticulum	87.69	88.6
Solyc03g111230.2.1	Tomato	nucleus, unclear	60.0	86.67
CDY56187	Canola	mitochondrion	88.21	86.43
PGSC0003DMT400039421	Potato	nucleus	75.9	85.55
Solyc06g071880.2.1	Tomato	cytosol	60.0	85.4
Solyc06g071870.2.1	Tomato	nucleus	75.9	84.57
PGSC0003DMT400069384	Potato	nucleus	75.38	84.0
CDX96093	Canola	endoplasmic reticulum, extracellular	84.1	83.67
Os09t0258600-01	Rice	nucleus	73.33	83.63
TraesCS5D01G174700.1	Wheat	cytosol	72.82	83.53
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	72.82	83.53
TraesCS5A01G170300.1	Wheat	cytosol	72.82	83.53
Zm00001d049815_P002	Maize	cytosol	72.31	82.46
EER90536	Sorghum	nucleus	72.31	82.46
CDY12646	Canola	cytosol, plastid	84.62	82.09
CDY15709	Canola	extracellular	89.23	82.08
Zm00001d031611_P001	Maize	cytosol	71.79	81.87
EER90537	Sorghum	nucleus	71.79	81.87
CDY07422	Canola	mitochondrion	84.62	81.68
TraesCS7B01G157300.1	Wheat	golgi, unclear	71.79	81.4
TraesCS7D01G260500.1	Wheat	cytosol	71.79	81.4
EES19208	Sorghum	cytosol	71.28	81.29
CDY01809	Canola	extracellular	84.62	81.28
TraesCS7A01G259500.1	Wheat	cytosol	71.28	80.81
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	70.77	80.7
Os08t0530200-01	Rice	nucleus	70.77	80.7
CDY51350	Canola	cytosol, plastid	85.13	77.93
GSMUA_Achr4P16010_001	Banana	nucleus	75.38	77.78
VIT_01s0010g03370.t01	Wine grape	plastid	78.97	75.49
HORVU5Hr1G052280.2	Barley	plastid	74.87	74.87
VIT_17s0000g01520.t01	Wine grape	cytosol	77.44	72.25
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	78.46	71.16
HORVU7Hr1G054010.2	Barley	mitochondrion	72.31	70.5
CDY28886	Canola	extracellular	84.62	70.21
GSMUA_Achr5P14560_001	Banana	cytosol	75.9	67.89
VIT_18s0001g05140.t01	Wine grape	cytosol	41.54	65.85
GSMUA_Achr5P18680_001	Banana	cytosol	77.44	64.81
Zm00001d010009_P003	Maize	cytosol	66.67	61.03
OQU80827	Sorghum	cytosol	58.46	60.96
GSMUA_Achr11P...	Banana	mitochondrion	74.87	59.59
Zm00001d003788_P001	Maize	cytosol	24.62	54.55
Zm00001d033767_P002	Maize	nucleus	55.38	54.27
CDX91455	Canola	cytosol	17.95	53.85
Zm00001d011848_P001	Maize	nucleus	23.59	53.49
Zm00001d038017_P001	Maize	nucleus	16.41	52.46
Zm00001d049547_P001	Maize	cytosol	26.15	49.51
CDY50459	Canola	extracellular, plasma membrane	17.95	45.45
CDY50115	Canola	cytosol	20.51	43.48
CDY65682	Canola	cytosol	18.46	40.0
CDY24443	Canola	cytosol	41.54	30.57

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:3.90.470.10	GO:A0A078EPL9	EnsemblPlants:CDY03920	ProteinID:CDY03920	ProteinID:CDY03920.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117421001	InterPro:IPR036394	HAMAP:MF_01331_A
PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS
InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI0004EEAD26	SEG:seg

Description

BnaC07g11450D

Coordinates

chrLK031947:+:813963..815640

Molecular Weight (calculated)

22094.6 Da

IEP (calculated)

11.008

GRAVY (calculated)

-0.818

Length

195 amino acids

Sequence
(BLAST)

001: MRCSPKRPKY TSSFRVSSLR VKYSQEPDNS TKSCKARGAD LRVHFKNTRE TAHAIRKLPL IKAKRYLEDV IAHKQAIPFT RFCRGVGRTA QAKNRHSNGQ
101: GRWPAKSAQF VLDLLKNAES NAEVKGLDVD ALFISHIQVN QAAKQRRRTY RAHGRINPYM SNPCHIELIL SEKEEPVKKE PETKLAAKSK NGASS

Best Arabidopsis Sequence Match ( AT1G27400.1 )
(BLAST)

001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS

Arabidopsis Description

RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.