Factsheet for VIT_17s0000g01520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58763	Soybean	nucleus	78.95	91.16
PGSC0003DMT400039421	Potato	nucleus	74.16	89.6
KRH31467	Soybean	nucleus	77.51	89.5
Solyc03g111230.2.1	Tomato	nucleus, unclear	57.42	88.89
Solyc06g071870.2.1	Tomato	nucleus	74.16	88.57
Solyc06g071880.2.1	Tomato	cytosol	57.89	88.32
KRH08728	Soybean	cytosol, nucleus	70.81	88.1
PGSC0003DMT400069384	Potato	nucleus	73.68	88.0
KRH42661	Soybean	nucleus	78.95	87.3
Zm00001d049815_P002	Maize	cytosol	70.81	86.55
Zm00001d031611_P001	Maize	cytosol	70.81	86.55
EES19208	Sorghum	cytosol	70.81	86.55
AT1G27400.1	Thale cress	cytosol	72.73	86.36
KRG97436	Soybean	nucleus	74.64	86.19
EER90537	Sorghum	nucleus	70.33	85.96
Bra032828.1-P	Field mustard	cytosol	72.25	85.8
Os09t0258600-01	Rice	nucleus	69.86	85.38
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	69.86	85.38
EER90536	Sorghum	nucleus	69.86	85.38
AT1G67430.1	Thale cress	nucleus	71.29	85.14
Bra033999.1-P	Field mustard	nucleus	70.81	84.57
Bra004225.1-P	Field mustard	nucleus	69.38	82.86
VIT_01s0010g03370.t01	Wine grape	plastid	80.38	82.35
TraesCS7B01G157300.1	Wheat	golgi, unclear	67.46	81.98
TraesCS7D01G260500.1	Wheat	cytosol	67.46	81.98
Os08t0530200-01	Rice	nucleus	66.99	81.87
TraesCS5D01G174700.1	Wheat	cytosol	66.51	81.76
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	66.51	81.76
TraesCS5A01G170300.1	Wheat	cytosol	66.51	81.76
CDY27616	Canola	cytosol	72.25	81.62
TraesCS7A01G259500.1	Wheat	cytosol	66.99	81.4
GSMUA_Achr4P16010_001	Banana	nucleus	73.21	80.95
CDY11812	Canola	cytosol, nucleus, plastid	72.73	79.58
CDX90084	Canola	endoplasmic reticulum	72.73	78.76
CDY03920	Canola	extracellular, mitochondrion	72.25	77.44
CDY56187	Canola	mitochondrion	73.68	77.39
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	79.43	77.21
CDX96093	Canola	endoplasmic reticulum, extracellular	72.25	77.04
CDY07422	Canola	mitochondrion	72.73	75.25
CDY12646	Canola	cytosol, plastid	72.25	75.12
CDY01809	Canola	extracellular	72.25	74.38
VIT_18s0001g05140.t01	Wine grape	cytosol	43.54	73.98
Bra010943.1-P	Field mustard	cytosol	71.77	73.89
CDY15709	Canola	extracellular	74.16	73.11
HORVU7Hr1G054010.2	Barley	mitochondrion	68.9	72.0
HORVU5Hr1G052280.2	Barley	plastid	66.99	71.79
GSMUA_Achr5P14560_001	Banana	cytosol	74.16	71.1
CDY51350	Canola	cytosol, plastid	72.25	70.89
GSMUA_Achr5P18680_001	Banana	cytosol	75.6	67.81
OQU80827	Sorghum	cytosol	57.89	64.71
CDY28886	Canola	extracellular	72.73	64.68
Zm00001d010009_P003	Maize	cytosol	64.59	63.38
Zm00001d011848_P001	Maize	nucleus	24.88	60.47
Zm00001d003788_P001	Maize	cytosol	25.36	60.23
GSMUA_Achr11P...	Banana	mitochondrion	70.33	60.0
Zm00001d038017_P001	Maize	nucleus	16.75	57.38
Zm00001d033767_P002	Maize	nucleus	54.55	57.29
Zm00001d049547_P001	Maize	cytosol	27.27	55.34

Protein Annotations

EntrezGene:100242281	wikigene:100242281	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	ProteinID:CBI15653	ProteinID:CBI15653.3
UniProt:D7SGX3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
InterPro:IPR036394	EntrezGene:LOC100242281	wikigene:LOC100242281	HAMAP:MF_01331_A	PFAM:PF00237	ScanProsite:PS00464
PANTHER:PTHR11593	PANTHER:PTHR11593:SF17	InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf
SUPFAM:SSF54843	TIGR:TC58153	TIGRFAMs:TIGR01038	UniParc:UPI0001BE0EC3	ArrayExpress:VIT_17s0000g01520	EnsemblPlantsGene:VIT_17s0000g01520
EnsemblPlants:VIT_17s0000g01520.t01	RefSeq:XP_002283698	RefSeq:XP_002283698.1	RefSeq:XP_003634214	RefSeq:XP_003634214.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:1080958..1084218

Molecular Weight (calculated)

23457.1 Da

IEP (calculated)

10.905

GRAVY (calculated)

-0.803

Length

209 amino acids

Sequence
(BLAST)

001: MTRKGFSLPS PATLAAGAEE EAVAAAMVKY SREPDNPTKS CKARGSDLRV HFKNTRETAH AIRKLRLTKA KRYLEDVLAH KQAIPFQRFC RGVGRTAQAK
101: NRHSNGQGRW PVKSAKFILD LLKNAESNAD LKGLDVDSLY VSHIQVNQAQ KQRRRTYRAH GRINPYMSSP CHIELILSEK EEPVQKEPDT QLAPRKTKKT
201: QALRSGASS

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.