Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032828.1-P | Field mustard | cytosol | 98.86 | 98.86 |
| AT1G67430.1 | Thale cress | nucleus | 95.45 | 96.0 |
| CDY27616 | Canola | cytosol | 98.3 | 93.51 |
| CDY56187 | Canola | mitochondrion | 98.86 | 87.44 |
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 67.05 | 87.41 |
| Solyc06g071880.2.1 | Tomato | cytosol | 67.61 | 86.86 |
| KRH58763 | Soybean | nucleus | 89.2 | 86.74 |
| PGSC0003DMT400039421 | Potato | nucleus | 85.23 | 86.71 |
| Solyc06g071870.2.1 | Tomato | nucleus | 85.8 | 86.29 |
| PGSC0003DMT400069384 | Potato | nucleus | 85.23 | 85.71 |
| KRH08728 | Soybean | cytosol, nucleus | 81.82 | 85.71 |
| KRH31467 | Soybean | nucleus | 88.07 | 85.64 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 82.39 | 85.29 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 82.39 | 85.29 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 82.39 | 85.29 |
| KRG97436 | Soybean | nucleus | 87.5 | 85.08 |
| Os09t0258600-01 | Rice | nucleus | 82.39 | 84.8 |
| EER90536 | Sorghum | nucleus | 81.25 | 83.63 |
| KRH42661 | Soybean | nucleus | 89.2 | 83.07 |
| Zm00001d049815_P002 | Maize | cytosol | 80.68 | 83.04 |
| EER90537 | Sorghum | nucleus | 80.68 | 83.04 |
| EES19208 | Sorghum | cytosol | 80.11 | 82.46 |
| Zm00001d031611_P001 | Maize | cytosol | 80.11 | 82.46 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 80.11 | 81.98 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 80.11 | 81.98 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 79.55 | 81.87 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 79.55 | 81.4 |
| Os08t0530200-01 | Rice | nucleus | 78.98 | 81.29 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 84.09 | 78.31 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 88.07 | 75.98 |
| HORVU5Hr1G052280.2 | Barley | plastid | 82.39 | 74.36 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 86.36 | 72.73 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 87.5 | 71.63 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 79.55 | 70.0 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 85.23 | 68.81 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 46.59 | 66.67 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 85.8 | 64.81 |
| Zm00001d010009_P003 | Maize | cytosol | 74.43 | 61.5 |
| OQU80827 | Sorghum | cytosol | 65.34 | 61.5 |
| GSMUA_Achr11P... | Banana | mitochondrion | 83.52 | 60.0 |
| Zm00001d033767_P002 | Maize | nucleus | 61.93 | 54.77 |
| Zm00001d003788_P001 | Maize | cytosol | 27.27 | 54.55 |
| Zm00001d011848_P001 | Maize | nucleus | 26.14 | 53.49 |
| Zm00001d038017_P001 | Maize | nucleus | 18.18 | 52.46 |
| Zm00001d049547_P001 | Maize | cytosol | 29.55 | 50.49 |
Protein Annotations
| MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | EntrezGene:839630 | ProteinID:AAF99734.1 | ProteinID:AEE30825.1 | EMBL:AF428271 |
| EMBL:AF428449 | ArrayExpress:AT1G27400 | EnsemblPlantsGene:AT1G27400 | RefSeq:AT1G27400 | TAIR:AT1G27400 | RefSeq:AT1G27400-TAIR-G |
| EnsemblPlants:AT1G27400.1 | TAIR:AT1G27400.1 | EMBL:AY037249 | EMBL:AY077651 | EMBL:AY088522 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 |
| InterPro:IPR036394 | RefSeq:NP_174060.1 | PFAM:PF00237 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00464 | PANTHER:PTHR11593 |
| PANTHER:PTHR11593:SF17 | UniProt:Q93VI3 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf |
| SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI0000132F16 | SEG:seg | : | : |
Description
RPL17A60S ribosomal protein L17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VI3]
Coordinates
chr1:+:9515114..9517070
Molecular Weight (calculated)
19897.9 Da
IEP (calculated)
10.792
GRAVY (calculated)
-0.799
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSQEPDN ITKSCKARGA DLRVHFKNTR ETAHAIRKLP LNKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKGASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.