CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58763	Soybean	nucleus	94.71	98.89
KRH31467	Soybean	nucleus	91.53	95.58
KRH08728	Soybean	cytosol, nucleus	83.07	93.45
KRG97436	Soybean	nucleus	88.36	92.27
Solyc03g111230.2.1	Tomato	nucleus, unclear	64.02	89.63
AT1G27400.1	Thale cress	cytosol	83.07	89.2
Solyc06g071880.2.1	Tomato	cytosol	64.55	89.05
PGSC0003DMT400039421	Potato	nucleus	81.48	89.02
Bra032828.1-P	Field mustard	cytosol	82.54	88.64
Solyc06g071870.2.1	Tomato	nucleus	81.48	88.0
EES19208	Sorghum	cytosol	79.37	87.72
PGSC0003DMT400069384	Potato	nucleus	80.95	87.43
Os09t0258600-01	Rice	nucleus	78.84	87.13
AT1G67430.1	Thale cress	nucleus	80.42	86.86
EER90537	Sorghum	nucleus	78.31	86.55
EER90536	Sorghum	nucleus	78.31	86.55
Zm00001d037732_P002	Maize	cytosol, extracellular, mitochondrion, plastid	78.31	86.55
Bra033999.1-P	Field mustard	nucleus	79.89	86.29
Zm00001d049815_P002	Maize	cytosol	77.78	85.96
Zm00001d031611_P001	Maize	cytosol	77.25	85.38
TraesCS5D01G174700.1	Wheat	cytosol	76.72	85.29
TraesCS5B01G167100.1	Wheat	cytosol, golgi, nucleus, unclear	76.72	85.29
TraesCS5A01G170300.1	Wheat	cytosol	76.19	84.71
Bra004225.1-P	Field mustard	nucleus	78.31	84.57
GSMUA_Achr4P16010_001	Banana	nucleus	84.13	84.13
TraesCS7D01G260500.1	Wheat	cytosol	76.19	83.72
TraesCS7B01G157300.1	Wheat	golgi, unclear	76.19	83.72
TraesCS7A01G259500.1	Wheat	cytosol	75.66	83.14
Os08t0530200-01	Rice	nucleus	75.13	83.04
VIT_01s0010g03370.t01	Wine grape	plastid	88.36	81.86
VIT_17s0000g01520.t01	Wine grape	cytosol	87.3	78.95
Bra010943.1-P	Field mustard	cytosol	82.01	76.35
VIT_01s0010g03380.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	86.24	75.81
HORVU5Hr1G052280.2	Barley	plastid	76.72	74.36
GSMUA_Achr5P14560_001	Banana	cytosol	84.13	72.94
HORVU7Hr1G054010.2	Barley	mitochondrion	75.66	71.5
VIT_18s0001g05140.t01	Wine grape	cytosol	46.03	70.73
GSMUA_Achr5P18680_001	Banana	cytosol	84.13	68.24
OQU80827	Sorghum	cytosol	64.55	65.24
Zm00001d010009_P003	Maize	cytosol	72.49	64.32
Zm00001d003788_P001	Maize	cytosol	28.57	61.36
Zm00001d011848_P001	Maize	nucleus	27.51	60.47
GSMUA_Achr11P...	Banana	mitochondrion	78.31	60.41
Zm00001d038017_P001	Maize	nucleus	19.05	59.02
Zm00001d033767_P002	Maize	nucleus	60.32	57.29
Zm00001d049547_P001	Maize	cytosol	30.69	56.31
CDX91455	Canola	cytosol	18.52	53.85
CDY50115	Canola	cytosol	20.63	42.39
CDY50459	Canola	extracellular, plasma membrane	16.93	41.56
CDY65682	Canola	cytosol	19.05	40.0
CDY24443	Canola	cytosol	39.68	28.3

Protein Annotations

EntrezGene:100816536	MapMan:17.1.2.1.17	Gene3D:3.90.470.10	EMBL:ACUP02004822	EnsemblPlantsGene:GLYMA_08G103700	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	UniProt:I1KS12	InterPro:IPR036394	EnsemblPlants:KRH42661
ProteinID:KRH42661	ProteinID:KRH42661.1	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SUPFAM:SSF54843	TIGRFAMs:TIGR01038
UniParc:UPI00023C63CF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:7958591..7961505

Molecular Weight (calculated)

21525.0 Da

IEP (calculated)

10.968

GRAVY (calculated)

-0.828

Length

189 amino acids

Sequence
(BLAST)

001: MVKYSREPDN PTKSCKARGA DLRVHFKNSL MKKAENTRET AFAIRKLPLV KAKRYLEDVL AHKQAIPFRR FCRGVGRTAQ AKNRHSNGQG RWPVKSAKFI
101: LDLLKNAESN AEVKGLDVDA LYISHIQVNQ AQKQRRRTYR AHGRINPYMS SPCHIELILS EKEEPVKKEP ETKLTTSKKS QALRSGASS

Best Arabidopsis Sequence Match ( AT1G67430.1 )
(BLAST)

001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA

Arabidopsis Description

RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.