Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g111230.2.1 | Tomato | nucleus, unclear | 78.03 | 100.0 |
| PGSC0003DMT400069384 | Potato | nucleus | 91.91 | 90.86 |
| Bra033999.1-P | Field mustard | nucleus | 87.86 | 86.86 |
| KRH08728 | Soybean | cytosol, nucleus | 83.81 | 86.31 |
| AT1G67430.1 | Thale cress | nucleus | 87.28 | 86.29 |
| AT1G27400.1 | Thale cress | cytosol | 86.71 | 85.23 |
| KRH58763 | Soybean | nucleus | 89.02 | 85.08 |
| Bra032828.1-P | Field mustard | cytosol | 86.13 | 84.66 |
| Bra004225.1-P | Field mustard | nucleus | 85.55 | 84.57 |
| KRG97436 | Soybean | nucleus | 88.44 | 84.53 |
| EES19208 | Sorghum | cytosol | 83.24 | 84.21 |
| KRH31467 | Soybean | nucleus | 87.86 | 83.98 |
| Os09t0258600-01 | Rice | nucleus | 82.66 | 83.63 |
| TraesCS7B01G157300.1 | Wheat | golgi, unclear | 82.66 | 83.14 |
| TraesCS7D01G260500.1 | Wheat | cytosol | 82.66 | 83.14 |
| EER90537 | Sorghum | nucleus | 82.08 | 83.04 |
| Zm00001d037732_P002 | Maize | cytosol, extracellular, mitochondrion, plastid | 82.08 | 83.04 |
| Zm00001d049815_P002 | Maize | cytosol | 82.08 | 83.04 |
| TraesCS5D01G174700.1 | Wheat | cytosol | 81.5 | 82.94 |
| TraesCS5B01G167100.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.5 | 82.94 |
| TraesCS5A01G170300.1 | Wheat | cytosol | 81.5 | 82.94 |
| TraesCS7A01G259500.1 | Wheat | cytosol | 82.08 | 82.56 |
| Zm00001d031611_P001 | Maize | cytosol | 81.5 | 82.46 |
| EER90536 | Sorghum | nucleus | 81.5 | 82.46 |
| KRH42661 | Soybean | nucleus | 89.02 | 81.48 |
| Os08t0530200-01 | Rice | nucleus | 79.77 | 80.7 |
| CDY27616 | Canola | cytosol | 85.55 | 80.0 |
| CDX96093 | Canola | endoplasmic reticulum, extracellular | 87.86 | 77.55 |
| CDY11812 | Canola | cytosol, nucleus, plastid | 85.55 | 77.49 |
| CDX90084 | Canola | endoplasmic reticulum | 86.13 | 77.2 |
| GSMUA_Achr4P16010_001 | Banana | nucleus | 83.24 | 76.19 |
| VIT_01s0010g03370.t01 | Wine grape | plastid | 89.6 | 75.98 |
| CDY03920 | Canola | extracellular, mitochondrion | 85.55 | 75.9 |
| CDY12646 | Canola | cytosol, plastid | 87.86 | 75.62 |
| CDY07422 | Canola | mitochondrion | 87.86 | 75.25 |
| CDY01809 | Canola | extracellular | 87.86 | 74.88 |
| CDY56187 | Canola | mitochondrion | 86.13 | 74.87 |
| VIT_17s0000g01520.t01 | Wine grape | cytosol | 89.6 | 74.16 |
| Bra010943.1-P | Field mustard | cytosol | 85.55 | 72.91 |
| VIT_01s0010g03380.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 90.17 | 72.56 |
| HORVU5Hr1G052280.2 | Barley | plastid | 81.5 | 72.31 |
| CDY51350 | Canola | cytosol, plastid | 87.86 | 71.36 |
| HORVU7Hr1G054010.2 | Barley | mitochondrion | 82.08 | 71.0 |
| CDY15709 | Canola | extracellular | 86.71 | 70.75 |
| VIT_18s0001g05140.t01 | Wine grape | cytosol | 49.71 | 69.92 |
| GSMUA_Achr5P14560_001 | Banana | cytosol | 86.13 | 68.35 |
| CDY28886 | Canola | extracellular | 87.86 | 64.68 |
| GSMUA_Achr5P18680_001 | Banana | cytosol | 83.81 | 62.23 |
| OQU80827 | Sorghum | cytosol | 67.05 | 62.03 |
| Zm00001d010009_P003 | Maize | cytosol | 76.3 | 61.97 |
| GSMUA_Achr11P... | Banana | mitochondrion | 83.24 | 58.78 |
| Zm00001d003788_P001 | Maize | cytosol | 28.32 | 55.68 |
| Zm00001d033767_P002 | Maize | nucleus | 63.58 | 55.28 |
| Zm00001d011848_P001 | Maize | nucleus | 27.17 | 54.65 |
| Zm00001d049547_P001 | Maize | cytosol | 30.64 | 51.46 |
| Zm00001d038017_P001 | Maize | nucleus | 17.92 | 50.82 |
Protein Annotations
| EntrezGene:102577682 | MapMan:17.1.2.1.17 | Gene3D:3.90.470.10 | ProteinID:ABA81877 | ProteinID:ABA81877.1 | ProteinID:ABB29954 |
| ProteinID:ABB29954.1 | ProteinID:ABB55371 | ProteinID:ABB55371.1 | EMBL:DQ207869 | EMBL:DQ235197 | EMBL:DQ252494 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR036394 | RefSeq:NP_001274819.1 |
| PFAM:PF00237 | EnsemblPlantsGene:PGSC0003DMG400015245 | PGSC:PGSC0003DMG400015245 | EnsemblPlants:PGSC0003DMT400039421 | ScanProsite:PS00464 | PANTHER:PTHR11593 |
| PANTHER:PTHR11593:SF17 | UniProt:Q307X7 | InterPro:Ribosomal_L22 | InterPro:Ribosomal_L22/L17_CS | InterPro:Ribosomal_L22/L17_euk/arc | InterPro:Ribosomal_L22/L17_sf |
| SUPFAM:SSF54843 | TIGRFAMs:TIGR01038 | UniParc:UPI00005DB2CC | SEG:seg | : | : |
Description
Ribosomal protein PETRP [Source:PGSC_GENE;Acc:PGSC0003DMG400015245]
Coordinates
chr3:+:50819866..50822316
Molecular Weight (calculated)
19813.8 Da
IEP (calculated)
10.762
GRAVY (calculated)
-0.913
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKYSREPDN PTKSCKSRGS SLRVHFKNTR ETAHALRKMP LDKAKRYLED VLAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPVKSAG FILDLLKNAE
101: SNAEVKGLDV DSLYISHIQV NEAQKQRRRT YRAHGRINPY MSHPCHIELI LSEKEESVKK EPETQLAPRK AKA
101: SNAEVKGLDV DSLYISHIQV NEAQKQRRRT YRAHGRINPY MSHPCHIELI LSEKEESVKK EPETQLAPRK AKA
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
Arabidopsis Description
RPL17B60S ribosomal protein L17-2 [Source:UniProtKB/Swiss-Prot;Acc:P51413]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.