Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003104 | Potato | cytosol | 66.36 | 12.54 |
| Solyc01g057850.2.1 | Tomato | cytosol | 66.36 | 12.41 |
| VIT_05s0020g00170.t01 | Wine grape | nucleus | 60.0 | 7.66 |
| GSMUA_Achr3P24450_001 | Banana | cytosol | 67.27 | 7.28 |
| Os12t0564600-01 | Rice | plasma membrane | 71.82 | 6.82 |
| Zm00001d041582_P005 | Maize | cytosol | 73.64 | 6.69 |
| TraesCS5A01G087300.2 | Wheat | cytosol | 70.91 | 6.67 |
| TraesCS5B01G093200.2 | Wheat | cytosol | 70.91 | 6.66 |
| TraesCS5D01G098900.2 | Wheat | cytosol | 70.91 | 6.66 |
| KXG23713 | Sorghum | cytosol | 73.64 | 6.63 |
| CDX83176 | Canola | cytosol | 63.64 | 6.57 |
| HORVU5Hr1G022740.2 | Barley | nucleus | 70.91 | 6.54 |
| CDY21443 | Canola | cytosol | 63.64 | 6.54 |
| AT5G49930.1 | Thale cress | cytosol | 63.64 | 6.48 |
| Bra000600.1-P | Field mustard | cytosol | 63.64 | 6.41 |
| VIT_05s0077g00460.t01 | Wine grape | cytosol | 64.55 | 6.28 |
| KRH11885 | Soybean | cytosol | 64.55 | 6.21 |
| KRH36919 | Soybean | nucleus | 64.55 | 6.21 |
Protein Annotations
| EnsemblPlants:Zm00001d003610_P001 | EnsemblPlants:Zm00001d003610_T001 | EnsemblPlantsGene:Zm00001d003610 | Gene3D:2.30.310.10 | PANTHER:PTHR15239 | PANTHER:PTHR15239:SF6 |
| PFAM:PF05833 | ProteinID:ONM17227.1 | UniParc:UPI0008446F50 | UniProt:A0A1D6EA07 | MapMan:35.2 | : |
Description
zinc knuckle (CCHC-type) family protein
Coordinates
chr2:+:50101247..50101795
Molecular Weight (calculated)
12883.9 Da
IEP (calculated)
9.178
GRAVY (calculated)
-0.057
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCSGIIESG ESEKVLLLMK SGVRIPFYVH FCSDKSTTPS GFNLKLRKHI HNKRLEDVHM LRYDRIMLFH FGFGSNAHFI ILDLYAQRNI LLMDLEYTVM
101: TLRSHRLLPD
101: TLRSHRLLPD
1: MLRTRLLWFT LGFSVTGGSI AHIVWRDLYA ERFAISSDMK EKFSALEGRV SGLESGGYEN PNPAQVES
Arabidopsis Description
Fanconi anemia group D2 protein [Source:UniProtKB/TrEMBL;Acc:Q8W482]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.