Factsheet for PGSC0003DMT400003104

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g057850.2.1	Tomato	cytosol	86.25	85.37
Zm00001d003610_P001	Maize	cytosol	12.54	66.36
VIT_05s0020g00170.t01	Wine grape	nucleus	64.95	43.85
GSMUA_Achr3P24450_001	Banana	cytosol	65.81	37.7
VIT_05s0077g00460.t01	Wine grape	cytosol	72.34	37.26
CDX83176	Canola	cytosol	67.7	37.0
CDY21443	Canola	cytosol	67.87	36.92
KRH11885	Soybean	cytosol	71.82	36.57
AT5G49930.1	Thale cress	cytosol	67.35	36.3
Bra000600.1-P	Field mustard	cytosol	67.7	36.08
KRH36919	Soybean	nucleus	70.79	36.05
Os12t0564600-01	Rice	plasma membrane	66.49	33.39
TraesCS5A01G087300.2	Wheat	cytosol	65.12	32.39
TraesCS5B01G093200.2	Wheat	cytosol	65.12	32.37
TraesCS5D01G098900.2	Wheat	cytosol	64.78	32.17
Zm00001d041582_P005	Maize	cytosol	65.46	31.49
HORVU5Hr1G022740.2	Barley	nucleus	64.43	31.46
KXG23713	Sorghum	cytosol	65.46	31.2
PGSC0003DMT400003105	Potato	plastid	2.41	2.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400003104	EnsemblPlantsGene:PGSC0003DMG401001235	Gene3D:2.30.310.10	ncoils:Coil	PANTHER:PTHR15239	PANTHER:PTHR15239:SF6
PFAM:PF05833	PGSC:PGSC0003DMG401001235	SEG:seg	UniParc:UPI000294F3BD	UniProt:M0ZL59	MapMan:17.3.3.2.3

Description

EMB1441 [Source:PGSC_GENE;Acc:PGSC0003DMG401001235]

Coordinates

chr1:-:35875121..35883362

Molecular Weight (calculated)

66015.4 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.482

Length

582 amino acids

Sequence
(BLAST)

001: MVKVRMNTAD VAAEVKCLRR LIGMRCSNVY DLSPKTYVFK LMNSSGISES GESEKVLLLM ESGVRLHTTD YLRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
101: LGYDRIILFQ FGLGSNAHYV ILELYAQGNI LLTDSDFMVM TLLRSHRDDD KGLAIMSRHR YPVETCRVFK RTTTEKLQAA LMSSSQTDKI EHVEDNEQGN
201: GGSDVPQQKQ VNQKSIKATN STKKGNDGAR AKSPTLKVVL GEALGYGPAL SEHIILDAGL VPNTKIDTDF KLEGNTLLSL TEAVKQFEDW LEDIILGEKV
301: PEGYILMQQK ALSKKDSNIC DSGSSEKIYD EFCPLLLNQL KCRDFMKFEI FDAALDEFYS KIESQRSEQQ QKSKESTAMQ RLNKIRTDQE NRVVTLKQEV
401: EHCIKMAELI EYNLEDADAA ILAVRVALAN GMSWEDLARM VKEEKRSGNP VAGLIDKLHL ERNCMTLLLS NNLDEMDDDE KTQPVDKVEV DLALSAHANA
501: RRWYEMKKKQ ENKQEKTVTA HEKAFKAAER KTRLQLSQPI PWALTVTRNP IVDPNEPLTR LATLLNAISI VRKLLMDEHA IT

Best Arabidopsis Sequence Match ( AT5G49930.1 )
(BLAST)

0001: MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS

Arabidopsis Description

emb1441Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.