Factsheet for VIT_05s0077g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g00170.t01	Wine grape	nucleus	63.01	82.6
VIT_05s0020g00290.t01	Wine grape	endoplasmic reticulum	27.35	78.03
Solyc01g057850.2.1	Tomato	cytosol	40.44	77.72
GSMUA_Achr3P24450_001	Banana	cytosol	67.17	74.7
KRH11885	Soybean	cytosol	73.72	72.88
KRH36919	Soybean	nucleus	73.36	72.53
PGSC0003DMT400003104	Potato	cytosol	37.26	72.34
CDX83176	Canola	cytosol	67.88	72.02
CDY21443	Canola	cytosol	67.79	71.59
AT5G49930.1	Thale cress	cytosol	68.23	71.39
Bra000600.1-P	Field mustard	cytosol	67.79	70.15
Zm00001d003610_P001	Maize	cytosol	6.28	64.55
Os12t0564600-01	Rice	plasma membrane	64.07	62.47
TraesCS5D01G098900.2	Wheat	cytosol	63.98	61.69
VIT_15s0045g00300.t01	Wine grape	cytosol	4.51	60.71
TraesCS5A01G087300.2	Wheat	cytosol	62.48	60.34
TraesCS5B01G093200.2	Wheat	cytosol	62.3	60.12
KXG23713	Sorghum	cytosol	64.51	59.71
Zm00001d041582_P005	Maize	cytosol	63.89	59.67
HORVU5Hr1G022740.2	Barley	nucleus	61.95	58.72
VIT_05s0020g00250.t01	Wine grape	nucleus	1.68	5.32
VIT_05s0020g00320.t01	Wine grape	cytosol	1.42	4.28
VIT_05s0020g00120.t01	Wine grape	nucleus	0.71	2.68
VIT_05s0020g00310.t01	Wine grape	cytosol, nucleus	2.83	2.56

Protein Annotations

MapMan:17.3.3.2.3	Gene3D:2.30.310.10	Gene3D:4.10.60.10	ProteinID:CCB47947	ProteinID:CCB47947.1	ncoils:Coil
InterPro:DUF3441	InterPro:DUF814	UniProt:F6H6Z8	EMBL:FN595246	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0008270	InterPro:IPR001878	PFAM:PF00098	PFAM:PF05670	PFAM:PF05833
PFAM:PF11923	PFscan:PS50158	PANTHER:PTHR15239	PANTHER:PTHR15239:SF6	SMART:SM00343	SUPFAM:SSF57756
UniParc:UPI0002109006	ArrayExpress:VIT_05s0077g00460	EnsemblPlantsGene:VIT_05s0077g00460	EnsemblPlants:VIT_05s0077g00460.t01	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:262134..271036

Molecular Weight (calculated)

126773.0 Da

IEP (calculated)

6.991

GRAVY (calculated)

-0.685

Length

1130 amino acids

Sequence
(BLAST)

0001: MVKVRMNTAD VAAEIKCLRR LIGMRCANVY DLSPKTYMFK LMNSSGVTES GESEKVLLLM ESGVRLHTTA YVRDKSMTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRVVLFQ FGLGANAHYV ILELYAQGNI LLTDSEFMVM TLLRSHRDDD KGVAIMSRHR YPVEICRVFE RTATTKLQAA LTSPKESESN EAKQGNNKGV
0201: KSSEPSKNTN DGARAKQATL KTVLGEALGY GPALSEHIIL DAGLIPNTKV TKDSKFDIDT IQRLAQSVTK FENWLEDVIS GDQVPEGYIL MQNKIFGKDC
0301: PPSQPDRGSQ IYDEFCPILL NQFKSREFVK FETFDAALDE FYSKIESQRS EQQQKAKEGS AMQKLTKIRV DQENRVHTLK KEVDHCIKMA ELIEYNLEDV
0401: DAAILAVRVA LANGMNWEDL ARMVKEEKKS GNPVAGLIDK LYLERNCMTL LLSNNLDEMD DDEKTLPVDK VEVDLALSAH ANARRWYEQK KRQENKQEKT
0501: VIAHEKAFKA AEKKTRLQLS QEKTVATISH MRKVHWFEKF NWFISSENYL VISGRDAQQN EMIVKRYMSK GDLYIHADLH GASSTVIKNH KPEHPVPPLT
0601: LNQAGCFTVC HSQAWDSKIV TSAWWVYPHQ VSKTAPTGEY LTVGSFMIRG KKNFLPPHPL IMGFGLLFRL DESSLGSHLN ERRVRGEEEG AQDFEENESL
0701: KGNSDSESEK EETDEKRTAE SKSIMDPSTH QPILEGFSEI SSAHNELTTS NVGSINLPEV PLEERNMLNG NDSEHIADIS GGHVSSVNPQ LEDLIDRALE
0801: LGSNTASGKK YALETSQVDL EEHNHEDRKA TVREKPYISK AERRKLKKGQ KTSTSDAGGD HGQEEIEENN VSTSQPDKDV KNSQPAGGKI SRGQKGKLKK
0901: MKEKYADQDE EERSIRMALL ASAGRAHKID KEKENENADT GKGMKPVNGP EEAPKICYKC KKVGHLSRDC PEHPDGTIHS HSNGVEDRRV DLDNSATEMD
1001: RVAMEEDDIH EIGEEEKGKL NDVDYLTGNP LPNDILLYAV PVCGPYSALQ TYKYRVKIIP GTAKKGKAAK TAMNLFSHMP EATSREKELM KACTDPELVA
1101: AIIGNVKITA AGLTQLKQKQ KKGKKSSKAS

Best Arabidopsis Sequence Match ( AT5G49930.1 )
(BLAST)

0001: MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS

Arabidopsis Description

emb1441Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.