CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11885	Soybean	cytosol	95.19	95.19
Solyc01g057850.2.1	Tomato	cytosol	39.72	77.21
VIT_05s0077g00460.t01	Wine grape	cytosol	72.53	73.36
CDY21443	Canola	cytosol	67.37	71.96
CDX83176	Canola	cytosol	66.75	71.64
AT5G49930.1	Thale cress	cytosol	67.54	71.48
GSMUA_Achr3P24450_001	Banana	cytosol	63.52	71.46
PGSC0003DMT400003104	Potato	cytosol	36.05	70.79
Bra000600.1-P	Field mustard	cytosol	67.54	70.7
Zm00001d003610_P001	Maize	cytosol	6.21	64.55
VIT_05s0020g00170.t01	Wine grape	nucleus	48.03	63.69
Os12t0564600-01	Rice	plasma membrane	61.94	61.09
TraesCS5D01G098900.2	Wheat	cytosol	62.55	61.01
TraesCS5A01G087300.2	Wheat	cytosol	61.24	59.83
TraesCS5B01G093200.2	Wheat	cytosol	61.24	59.78
Zm00001d041582_P005	Maize	cytosol	62.12	58.68
KXG23713	Sorghum	cytosol	62.55	58.56
HORVU5Hr1G022740.2	Barley	nucleus	60.54	58.05

Protein Annotations

EntrezGene:100803745	MapMan:17.3.3.2.3	Gene3D:2.30.310.10	Gene3D:4.10.60.10	EMBL:ACUP02005400	ncoils:Coil
InterPro:DUF3441	InterPro:DUF814	EnsemblPlantsGene:GLYMA_09G031900	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	UniProt:I1L0M7	InterPro:IPR001878	EnsemblPlants:KRH36919	ProteinID:KRH36919	ProteinID:KRH36919.1
ProteinID:KRH36920.1	ProteinID:KRH36921.1	ProteinID:KRH36922.1	PFAM:PF00098	PFAM:PF05670	PFAM:PF05833
PFAM:PF11923	PFscan:PS50158	PANTHER:PTHR15239	PANTHER:PTHR15239:SF6	SMART:SM00343	SUPFAM:SSF57756
UniParc:UPI0002954C31	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:2623563..2634003

Molecular Weight (calculated)

127637.0 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.681

Length

1143 amino acids

Sequence
(BLAST)

0001: MVKVRLNTAD VAAEVKCLRR LIGMRCSNVY DLSPKTYVFK LMNSSGVSES GESEKVLLLM ESGVRLHTTL YLRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIILFQ FGLGENANYV ILELYAQGNI LLTDSTFTVM TLLRSHRDDD KGLAIMSRHR YPVESCRVFE RTTIEKLRTS LVSSKEDDND DAVKADGNGS
0201: NASNVAKEKQ GTHKGGKSSA TLKIVLGEAL GYGPALSEHI LLDAGLIPST KVPKDRTWDD ATVQALVQAV VRFEDWMQDV ISGELVPEGY ILMQNKNMGK
0301: DSSISQPGSV SQMYDEFCPI LLNQFKSRDY TKFETFDAAL DEFYSKIESQ RSEQQQKAKE NSASQKLNRI RQDQENRVHA LRKEADHCVK MAELIEYNLE
0401: DVDAAILAVR VALAKGMNWD DLARMVKEEK KAGNPVAGLI DKLHLDRNCM TLLLSNNLDE MDDDEKTLPV DKVEVDLALS AHANARRWYE QKKKQESKQG
0501: KTVTAHEKAF KAAERKTRLQ LNQEKTVASI SHMRKVHWFE KFNWFISSEN YLVISGRDAQ QNEMIVKRYM SKGDLYIHAD LHGASSTVIK NHKPAQPVPP
0601: LTLNQAGCFT VCHSQAWDSK IVTSAWWVYP HQVSKTAPTG EYLTVGSFMI RGKKNFLPPH PLIMGFGLLF RLDESSLGSH LNERRVRGEE EAADDYEETG
0701: PLEDKSDSES EKDVTDIEPA TDLERNGNLS ADSHKPLPED FPADPSQTSL ATTDAETAIS QDFPAKETST LNMVDREILS DVGGNGLASV TPQLEELLDQ
0801: ALELGPVAKS SKKYGIEKSQ IDLDTEQHFE QTKTAVREKP YISKAERRKL KKEQKPGEED SNVEHGKDES KLKDISANLP VKEDQNLKKG GGQKISRGQK
0901: GKLKKIKEKY ADQDEEERSI RMTLLASSGK SITKEETSSE NDALDKGKKP GSGPSDAPKI PSDAPKICYK CKKAGHLSRD CKDQPDDLLH RNAVGEAEEN
1001: PKTTAIDTSQ ADRVAMEEDD INEIGEEEKE KLNDVDYLTG NPLPNDILLY AVPVCGPYSA VQSYKYRVKI IPGPTKKGKA AKTATNLFSH MSEATTREKE
1101: LMKACTDPEL VAAIVGNVKI SAAGLTQLKQ KQKKGKKSSK QES

Best Arabidopsis Sequence Match ( AT5G49930.1 )
(BLAST)

0001: MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS

Arabidopsis Description

emb1441Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.