Factsheet for AT5G49930.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21443	Canola	cytosol	91.48	92.34
Bra000600.1-P	Field mustard	cytosol	91.85	90.84
CDX83176	Canola	cytosol	88.43	89.67
Solyc01g057850.2.1	Tomato	cytosol	40.37	74.15
GSMUA_Achr3P24450_001	Banana	cytosol	64.35	68.41
VIT_05s0077g00460.t01	Wine grape	cytosol	71.39	68.23
KRH11885	Soybean	cytosol	71.67	67.72
KRH36919	Soybean	nucleus	71.48	67.54
PGSC0003DMT400003104	Potato	cytosol	36.3	67.35
Zm00001d003610_P001	Maize	cytosol	6.48	63.64
TraesCS5D01G098900.2	Wheat	cytosol	65.74	60.58
Os12t0564600-01	Rice	plasma membrane	64.26	59.88
TraesCS5B01G093200.2	Wheat	cytosol	63.98	59.01
TraesCS5A01G087300.2	Wheat	cytosol	63.89	58.97
VIT_05s0020g00170.t01	Wine grape	nucleus	46.57	58.35
KXG23713	Sorghum	cytosol	64.81	57.33
Zm00001d041582_P005	Maize	cytosol	64.17	57.27
HORVU5Hr1G022740.2	Barley	nucleus	63.06	57.13

Protein Annotations

MapMan:17.3.3.2.3	Gene3D:2.30.310.10	Gene3D:4.10.60.10	EntrezGene:835056	ProteinID:AED95872.1	ArrayExpress:AT5G49930
EnsemblPlantsGene:AT5G49930	RefSeq:AT5G49930	TAIR:AT5G49930	RefSeq:AT5G49930-TAIR-G	EnsemblPlants:AT5G49930.1	TAIR:AT5G49930.1
Unigene:At.29760	ProteinID:BAA97014.1	ncoils:Coil	InterPro:DUF3441	InterPro:DUF814	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	InterPro:IPR001878	RefSeq:NP_199804.1	PFAM:PF00098
PFAM:PF05670	PFAM:PF05833	PFAM:PF11923	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50158
PANTHER:PTHR15239	PANTHER:PTHR15239:SF6	UniProt:Q9LTX7	SMART:SM00343	SUPFAM:SSF57756	UniParc:UPI00000A7988
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	Symbol:emb1441	SEG:seg	:	:

Description

emb1441Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]

Coordinates

chr5:-:20308033..20312892

Molecular Weight (calculated)

121438.0 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.616

Length

1080 amino acids

Sequence
(BLAST)

0001: MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.